Gene detail

Gene detail information of Glyur000073s00007785

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G18030.1	2.00E-88	Peptide methionine sulfoxide reductase family protein
NR	XP_004509351.1	4.45E-146	PREDICTED: peptide methionine sulfoxide reductase A5-like [Cicer arietinum]
COG	YP_006446699.1	2.00E-37	methionine-S-sulfoxide reductase [Desulfomonile tiedjei DSM 6799]
Swissprot	tr\|Q9SL43\|MSRA5_ARATH	3.00E-110	Peptide methionine sulfoxide reductase A5 (Precursor)
trEMBL	tr\|I1JCI6\|I1JCI6_SOYBN	2.00E-141	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G05550.1}

Sequence

Transcript Sequence

>Glyur000073s00007785.1
ATATTTTTAATTTTAAAATTGATGTGTTAATTAGATCTATCTATATATCATTAAATTTTGTAATCTATGAACGGATTTGATATACAAAAATTAAAATTGAGTCATTGAGTGTGAAGACCAGAGAAGCGATAAAAACGACATATCGGTGGAGGGTGCACTGCCGCGTTCGGCTGTTCACACATCCGCCTCCTAAAAACGACAACTGATACTTGATCCCAGGCCTTGGTTTCCACTTAAAAGCAAAGAACAAAACGCAACGCCCTCGGGGCACGCAAAATGGCAGTTCCAGAGAGGAGCCGTTATTATCATATCGCCTCAGTATTCATCGTCCTCATTGCTTTCTTCCTCGACAATGCCCTCTGCATCAGGTTACCGGATCGGGTTCCCCAACCCGCCCGCGACCAAGCCGATCAACAGCGCCTGCAAACGGCGGTTTTCGCCCTCGGAAGCTTCTGGAGATCCGAAGCGGTGTTCGGGTGCTTACCCGGCGTTGTTCGGACCACCGTTGGCTACGCCGGCGGATCCAAATCCAATCCCGAGTACCGAAGCTTGGGTGACCACGCCGAGTCCGTTCAGGTTGAGTATGATCCGCGGCTGATTAGTTTTAGGGAACTTCTTGATATTTTTTGGTCAAGCCATGATCCCAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAATCAGTACAGATCTATTATTTTTGTTAATGGAACTGAAGAATCAAGAATGGCTGCTGTCAGAACAAACCAGGTCAAGAAGCAGCATTGTGACTACCCAAATACTGCAATTGGAACATTTTACCCTGCAGAGCCAGAGCACCAGAAATTTGAACTCAAGCAAAACAACTTCCTTATTCAGTTAATCGGGAACATGCCTGAAGAGGAGCTTGAGAGGTCAAGCCTGGCAACAAAGTTGAATGGATATGTAGCTGAGCTTTGTCCTCCAAATATCCAAAAGCATATTGATGCAAAGATCAACGAGATTATAAAAAAGGGTTGGCCCATTTTAAGGGAATTGTAATTGGCTTNGGGGGAAGTTGCTCGGATTGTCATTCTTTAGCTAACGTGCTTTCAGTGCATCTATAGGTTTGGTTCCATAGCTTGTACCAGTTGCAGGGTTCTACATATCAAAAAGAGAATCGAGCATGTGATGCTCGCCGATTATACTGTATTGTAATTATTGTAATTGCGATCCTACACTTGAGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00073	137134	140670	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0030091 protein repair

GO:0055114 oxidation-reduction process

molecular_function

GO:0008113 peptide-methionine (S)-S-oxide reductase activity

GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000073s00007785.1	PF01625.16	PMSR	50	190	6.80E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.683
SRR1783600	control	9.565
SRR1783602	moderate drought stress	6.692
SRR1811619	moderate drought stress	6.493

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.613
DRR006520	Root Summer glycyrrhizin high producing strain	12.731
DRR006521	Root Winter glycyrrhizin high producing strain	7.612
DRR006522	Root Winter glycyrrhizin high producing strain	7.365
DRR006523	Root Summer glycyrrhizin low producing strain	10.972
DRR006524	Root Summer glycyrrhizin low producing strain	11.196
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.805
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.711

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.849
SRR2868004	Drought Stress (root)	20.183
SRR2967015	Control (root)	17.943

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.933
SRR9715740	Leaf	10.886
SRR9715741	Leaf	9.482
SRR9715739	Root	7.137
SRR9715742	Root	15.107
SRR9715743	Root	12.209

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.798
SRR8749028	MeJA induced 9h	13.930
SRR8749029	MeJA induced 9h	11.977
SRR8749030	Uninduced	8.587
SRR8749031	Uninduced	5.948
SRR8749032	Uninduced	5.899

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.617
SRR8400027	Control - Root	39.906