Gene detail

Gene detail information of Glyur000073s00007770.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51240.1	9.00E-163	flavanone 3-hydroxylase
NR	XP_003629323.1	0	Naringenin,2-oxoglutarate 3-dioxygenase [Medicago truncatula]
COG	YP_004572412.1	1.00E-29	oxidoreductase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q07353\|FL3H_PETHY	0	Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)
trEMBL	tr\|D2DFB1\|D2DFB1_MEDTR	0	Naringenin 3-dioxygenase (Flavanone-3-hydroxylase) {ECO:0000313\|EMBL:AET03799.1}

Sequence

Transcript Sequence

>Glyur000073s00007770.1
GTGGAACTAACGGTCCTTCAAGCACTATGTGTAAGTTTATATATCTTCCATTCTCTTACCCATCCCTCAAACTCAGATTTCTATATATCTATCTACACTGAGCACACCAAAAACAAAATTAAGCACACTAAAAAAACAGAGAAACTCTGATTAACCAAACGATCCAAATTACACAATGGCAGTACCGGCTCCCAAAACTCTCACTTTTCTGGCGCAGGAAAAGACCCTTGAATCAAGCTTCGTTCGTGACGAAGAAGAGCGTCCAAAAGTTGCTTACAACGAATTCAGCAATGAGATCCCAATCATTTCGCTGGACGGAATCGACGAGGTGGGTGGGCGCAGAGCAGAGATTTGCAACAAGATCGTGGAGGCATGCGAGAATTGGGGTATCTTCCAGGTTGTTGATCATGGTGTGGACAGAGAGCTCATATCAGAGATGACCCGTCTCGCCAAAGAGTTCTTCGATTTGCCCCCTGAAGAGAAGCTTCGTTTTGATATGTCCGGTGGCAAAAAGGGTGGCTTCATTGTCTCCAGCCATCTCCAAGGAGAAGCAGTGAAGGATTGGAGAGAGATTGTGACATACTTCTCACACCCAATTAGAGAGAGGGACTACTCAAGGTGGCCAGACAAGCCACATGGGTGGAGAGGGATAACAGAGCAATATAGCGAGAAACTGATGGGTTTGGCATGCAAGCTATTGGAGGTGTTGTCAGAGGCAATGGGGTTAGAGAAGGAGGCCCTCACTAAGGCATGTGTGGATATGGACCAAAAGGTTGTGATCAATTTCTACCCGAAATGCCCCCAACCTGACCTCACACTCGGGCTTAAGCGACACACGGATCCTGGCACCATCACTCTGCTGCTTCAAGACCAGGTGGGTGGCCTTCAGGCTACCAATGATAATGGTAAGACGTGGATTACCGTTCAACCTGTGGAGGGTGCCTTCGTGGTCAATCTTGGAGACCATGGTCACTATCTGAGTAATGGAAGGTTCAAAAACGCTGATCACCAAGCAGTGGTGAACTCGAACTACAGCCGGTTGTCCATAGCCACGTTCCAAAACCCAGCACCCGATGCAATTGTGTACCCTTTGAAGGTTAGAGAGGGAGAGAAGCCTAAGATGAGCAAGGACCTTGAGATTGCTAGGATGAAGAAGCTTGCTAAGGAAAAAGAACTGAAGGACTTGGAGAAGGCAAAACTGGAAACCAAGCACTTGACTGAGATTCTTGCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00073	66554	69721	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00475	E1.14.11.9	EC:1.14.11.9	Flavonoid biosynthesis	map00941

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000073s00007770.1	PF14226.1	DIOX_N	41	151	6.10E-25
Glyur000073s00007770.1	PF03171.15	2OG-FeII_Oxy	198	297	1.20E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.031
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.088
DRR006520	Root Summer glycyrrhizin high producing strain	0.086
DRR006521	Root Winter glycyrrhizin high producing strain	0.047
DRR006522	Root Winter glycyrrhizin high producing strain	0.087
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	100.755
DRR006526	Leaf Summer glycyrrhizin high producing strain	98.185

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.183
SRR2868004	Drought Stress (root)	0.377
SRR2967015	Control (root)	0.456

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	136.248
SRR9715740	Leaf	49.420
SRR9715741	Leaf	32.594
SRR9715739	Root	0.000
SRR9715742	Root	0.201
SRR9715743	Root	0.099

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.062
SRR8749032	Uninduced	0.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.020
SRR8400027	Control - Root	0.072