Gene detail

Gene detail information of Glyur000073s00007769.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36050.2	6.00E-180	endonuclease/exonuclease/phosphatase family protein
NR	XP_006574678.1	0	PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Glycine max]
COG	YP_003958504.1	2.00E-25	exodeoxyribonuclease III [Eubacterium limosum KIST612]
trEMBL	tr\|I1JCH3\|I1JCH3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G05430.1}

Sequence

Transcript Sequence

>Glyur000073s00007769.1
ATGAAGGTTGTAACTTACAACGTGAACGGCCTGAGACAGCGCATAGCGCAGTTCGGGTCTCTCCGGAATCTTCTAAATTCATTCGACGCCGACATTATTTGCTTTCAGGAGACAAAACTTAGTCGGCAGGAAGTGACAGCGGATTTGGTGATGGCCGATGGATACGAATCATTCTTTTCGTGCACCCGTACCTCCCAAAAGGGCCGAACCGGTTATTCCGGTGTTATTACCTTTTGTCGTGTAAAGTCTGCGTTTTCGAGCAATGAAGCAGCCTTGCCCCTGGCGGCTGAGGAAGGCTTCACTGGTCTAATGTGTGACTCTCAAACTAGCACAGACAAATTGCCATTCAGCGTGGAAGACCTTGAGGAATTTTCAAAAGATGAGCTTCTTAGTGTTGATAGTGAGGGGCGATGCATTATCACTGATCACAGTCACTTTGTTCTTTTCAACGTTTACGGACCTCGAGCTGGAAGTGATGACACAGAAAGGATTCAGTTTAAGCAAAGATTTTACAGGATATTGCAGAAAAGATGGGAGTCTCTCCTGCATCAGGGAAGGAGAATATTTGTTGTTGGTGATCTCAACATTGCACCATTTGCAATTGATCGGTGTGATGCAGGACCTGATTTTGAAAATAACGAGTTTAGAAGATGGTTCAAATCAATGTTAATTGAAAATGGAGGCCAGTTTTTGGATGTCTTCAGAGCGAAGCATCCTGACAAAAGGGAAGCATACACCTGTTGGCCGCAAAATACAGGTGCTGAAGTATTTAACTTTGGGAGTAGAATCGACCATATTCTATGTGCTGGTTCATGCTTACATAAATCAGATGACCTGCAATGCCATAGTTTTATGAGATGCCATGTTAAGGAATGTGACATTCTGACACAGTACAAACGGTGTAAACCTGAAAGTACACTGAGTGCCCACAGGTGGAAGGGAGGGCGGAGTGTTAAACTGGAAGGATCTGATCATGCTCCGGTTTTTATGACTTTAATGGAAATTCCTGAGGTCTCTCTGCATAGTACTCCCTCCTTATCTGCTAGATATGTTCCCATGGTTCATGGGATACAGCAAACTCTAGTGTCAGTGTTGATGAAAAGACAATTTTCTGAACAAACCAAATCATGCAAGATGGCACGTGAAGACATCTCAATGGGTAGTACTTGTGAGAGAATAGAAGAACCAGTTGACAAAACTGGTTTGTCTGCCAGTGAATGTGATTCTCTTCCAAATCAGGATTCTGAAGTAAGCATTTTGGAATCAAATGAATTTTCCATAGGTTCTTCTCAGGAGGTTGTTTCTAAATCACGAAGTGAATATGTAAAGTCNATAACCAGGCAATGCAATGACTCCAAGAAAAAAGCTAGAAATAGTCAATGGTCCCAACTCTCACTTAGGTCGTTTTTTCAGAAAAGCACAAATCTTGNCAATGGTGTCAATGACTCTTGTACTGATGATAACTCAAATAATCAGGCAGAACCCTCACAACCCAACTCTCAATTACTTGAAACTCCTACAGTGTTTGATGATAGTAGCAGTCCCAATCAATTTGAGTTGAATACTGATGCGTGTGATCAGGATTTAGCTGAACCAAATGATAGTTCTAGAAAGGAAGAACAGAGTAATGTGGCTTCGCTGGAGTGGCAAAGAATCCAAAAATTGATGCAGAGCAGTATACCTCTTTGCAAGGGACATAAGGAACCTTGTATTGCTCGGGTGGTGAGGAAACAAGGACCTAATTTTGGTCGCAGATTCTATGTTTGTGCTCGAGCTGAGGGCCCTGCATCTAATCCTGAAGCAAACTGTGGTTACTTTAAATGGGCTACTTCAAAGTCAAGGAATAAATAACGGTGGAGAATAACACTTAAATCAAAGGATGATTCATATGCCCTCCCCATCCAAATTCCTTTTATGGTGACAATATGGAGCTGACATCCCAGTTTTGAATGATTCCGAAAGTTACTAACTTCCTATTCGAAGGAGATGCCTCTCATAATCTCTTGTCCACCCTTTTGACACGTCTTTGTAGCTCCCTGCTACAATTGTGAATGTTGTGCATTTCCGGCATAGTCAACCGTTGCCTCCTCATATGCAAAATAGCAGGCATGTTTCTCCATAGAGGAGAATAATTAAGGAGTAGACTTACGGAAATGGATAAAAAGAATTAGTCCTGCTGTCAATGCTCTATCTCAGCCATCTGACCTGGTTGGATCCTACCATTCTACAGACTACAGCAGAAATTGAGGCGACCTTGCAACCATTCGATGATTTATTTACTGGGGTTTCTGCGTAGCACCATGTCCCTGCACCATGTTTGGTCTGAAAAGTGCTCCATCAAGATAAGTAGGGGTTCTACTTGGAGTGTAAGCTTAAGTTCCTCCCTCCCTCACTTTAGAGTATAAAATAAGTAGTAAGTAATGTCAGTCATTGATGAATAAATCAATGGTTAATATACATGCATAAACAAATTATAAATGTGATTATCAATCCTTGATTTTCTCATTAGCAATTGAGATAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00073	56846	61836	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10772	APEX2	EC:4.2.99.18	Base excision repair	map03410

Gene Ontology

biological_process
GO:0006281 DNA repair

molecular_function

GO:0004518 nuclease activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000073s00007769.1	PF03372.18	Exo_endo_phos	4	325	2.10E-22
Glyur000073s00007769.1	PF06839.7	zf-GRF	561	610	3.80E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.487
SRR1783600	control	4.529
SRR1783602	moderate drought stress	6.155
SRR1811619	moderate drought stress	6.233

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.932
DRR006520	Root Summer glycyrrhizin high producing strain	4.825
DRR006521	Root Winter glycyrrhizin high producing strain	5.615
DRR006522	Root Winter glycyrrhizin high producing strain	5.612
DRR006523	Root Summer glycyrrhizin low producing strain	4.499
DRR006524	Root Summer glycyrrhizin low producing strain	4.503
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.865
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.819

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.026
SRR2868004	Drought Stress (root)	7.548
SRR2967015	Control (root)	8.779

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.739
SRR9715740	Leaf	8.352
SRR9715741	Leaf	5.658
SRR9715739	Root	0.648
SRR9715742	Root	2.412
SRR9715743	Root	1.668

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.151
SRR8749028	MeJA induced 9h	4.555
SRR8749029	MeJA induced 9h	2.291
SRR8749030	Uninduced	3.814
SRR8749031	Uninduced	3.136
SRR8749032	Uninduced	3.173

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.866
SRR8400027	Control - Root	6.891