Gene detail information of Glyur000073s00007762.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36020.1 | 8.00E-28 | cold shock domain protein 1 |
| NR | XP_004509364.1 | 6.85E-95 | PREDICTED: cold shock protein 1-like [Cicer arietinum] |
| COG | YP_005472583.1 | 2.00E-18 | putative cold shock protein [Caldisericum exile AZM16c01] |
| Swissprot | tr|O65639|CSP1_ARATH | 4.00E-55 | Cold shock protein 1 |
| trEMBL | tr|K7MH03|K7MH03_SOYBN | 6.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G23695.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00073 | 24444 | 25280 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CSD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000073s00007762.1 | PF00313.17 | CSD | 7 | 71 | 9.70E-25 |
| Glyur000073s00007762.1 | PF00098.18 | zf-CCHC | 114 | 128 | 7.00E-05 |
| Glyur000073s00007762.1 | PF00098.18 | zf-CCHC | 145 | 159 | 7.50E-05 |
| Glyur000073s00007762.1 | PF00098.18 | zf-CCHC | 191 | 204 | 4.00E-06 |
| Glyur000073s00007762.1 | PF00098.18 | zf-CCHC | 219 | 233 | 5.10E-06 |
| Glyur000073s00007762.1 | PF00098.18 | zf-CCHC | 259 | 273 | 4.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 46.957 |
| SRR1783600 | control | 40.922 |
| SRR1783602 | moderate drought stress | 49.021 |
| SRR1811619 | moderate drought stress | 61.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 80.925 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 102.943 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 100.189 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 98.333 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 49.558 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 46.255 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.715 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 89.070 |
| SRR2868004 | Drought Stress (root) | 68.160 |
| SRR2967015 | Control (root) | 63.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.577 |
| SRR9715740 | Leaf | 22.129 |
| SRR9715741 | Leaf | 26.300 |
| SRR9715739 | Root | 114.111 |
| SRR9715742 | Root | 84.534 |
| SRR9715743 | Root | 90.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 106.683 |
| SRR8749028 | MeJA induced 9h | 68.476 |
| SRR8749029 | MeJA induced 9h | 89.761 |
| SRR8749030 | Uninduced | 30.027 |
| SRR8749031 | Uninduced | 61.434 |
| SRR8749032 | Uninduced | 134.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 92.399 |
| SRR8400027 | Control - Root | 85.536 |