Gene detail

Gene detail information of Glyur000073s00007758

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38660.1	3.00E-88	Pathogenesis-related thaumatin superfamily protein
NR	XP_006574674.1	7.14E-178	PREDICTED: thaumatin-like protein 1-like [Glycine max]
Swissprot	tr\|P83332\|TLP1_PRUPE	8.00E-82	Thaumatin-like protein 1 (Precursor)
trEMBL	tr\|I1JCG6\|I1JCG6_SOYBN	3.00E-178	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G05320.1}

Sequence

Transcript Sequence

>Glyur000073s00007758.1
ATGTCTCCGATCTCACATCATCATCATCCCCGACATTCTTCTTCTAACCGATTCTTCATTTTCCTACTTATCCTGGCTTTCAGAGGTGTGTGTCACTGTCACGTGTGTGTAATTAATAATTTTATACTCGAAGCAAATATTCTTAATTATAACAAAATTAAATACATGGAAACTGACAGAGGTTGCTCTGTTTTTTATAAAACCCAAACGTTTGCAGGGGTTTCAGTTTCGGCGACAACATTCACGTTCGTGAACAAGTGCGACCACACGGTGTGGCCAGGTATTCTGGGAAAACCAGACCTCGGAACAACGGGCTTCGAGCTCAAGAGAGGAAGCACACGCACCTTCCAAGCACCAACGGGTTGGTCGGGTAGATTCTGGGGAAGAACCGGATGCAAATTCGACGATTCCGGCCACGGAGCCTGTGCCACCGGCGACTGCGGCTCCGGCGAAATCAACTGCAACGGCAACGGCGCAACCCCGCCGGCCACGCTCGCCGAGTTCACGATCGGGTCCGGTTCCCCTGACTACTACGACGTGAGCCTCGTCGACGGCTATAACCTCCCCATGGTGGTGGAGGCAAGCGGCGGTTCCGGTTCCTGCGCCGTCACCGGATGCGGCGCGGACCTTAACCGGCGGTGCCCTTCGGAACTGAGGGTGGAGGGAGGCGACGCGTGCCAGAGTGCATGTCGCGCGTTTGGGAAGCCGGAGTATTGTTGCAGCGGCGCGTTTGGTTCACCTTCGACGTGCGCGCCTTCGGTGTACTCGCAGATTTTCAAGTCTGCGTGTCCAAAGTCATATAGCTATGCCTTTGATGATGCCACCAGCACTTTTACGTGTACAGCTGCTGATTATACAGTCACATTTTGTCCTTCCTCTTCTCCAAGTTTGAAGTCGTTAATGGAATCGGGGCCAGGATCATCGGTGGAGCAGGCTGCAGCAGCTACATCTTCGTGGATAGCCAATTTGGCAACAGGGGCATCCACCAGAAGCCAACCATGTGCACCTTCCCACTCTGCATTTCTTGTGGCTGTCACTTTCATAATTCTTTCCTATTTAGTCTCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00073	7768	9304	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000073s00007758.1	PF00314.12	Thaumatin	85	291	6.00E-85

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.606
SRR1783600	control	1.552
SRR1783602	moderate drought stress	2.208
SRR1811619	moderate drought stress	2.108

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.202
DRR006520	Root Summer glycyrrhizin high producing strain	0.201
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.555
DRR006524	Root Summer glycyrrhizin low producing strain	0.516
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.433
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.409

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.507
SRR2868004	Drought Stress (root)	10.302
SRR2967015	Control (root)	15.366

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.906
SRR9715740	Leaf	0.045
SRR9715741	Leaf	0.491
SRR9715739	Root	1.720
SRR9715742	Root	1.483
SRR9715743	Root	1.326

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.112
SRR8749029	MeJA induced 9h	0.058
SRR8749030	Uninduced	0.167
SRR8749031	Uninduced	0.044
SRR8749032	Uninduced	0.106

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.703
SRR8400027	Control - Root	0.874