Gene detail

Gene detail information of Glyur000073s00007757

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35987.1	1.00E-68	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_004509367.1	2.92E-125	PREDICTED: calmodulin-lysine N-methyltransferase-like [Cicer arietinum]
trEMBL	tr\|G7LC21\|G7LC21_MEDTR	3.00E-125	Methyltransferase, putative {ECO:0000313\|EMBL:AET03771.1}

Sequence

Transcript Sequence

>Glyur000073s00007757.1
AATTGGCCGTCAGAAGATGTTCTTGCTCACTATTGCTTGTCACATGCAGATANGTTCAGGTCTAAAAAAGTTATTGAGCTTGGTTCTGGCTACGGCTTGGCTGGATTTGTTATTGCAGCTGTTACTGAGGCATCAGAGGTTGTAATCTCAGATGGAAATCNACAAGTAGTTGATTATACTCAGCGTAACATTGAAGCCAACTCTGGAGCATTTGGGGATACAGTTGTGAAGTCTATGATACTTCACTGGAATCATGAAGATACTTTTAATGTTGCAGACACTTTTGATATCATTGTTGCAAGTGATTGCACTTTCTTTAAGGATTTCCACAGAGGCCTTGTTCANATTGTCAAACACTTGTTATCAAAAGCAGAATCTTCTGAGGCTATATTTTTAAGTCCGAAAAGAGGCAACTCATTGGACCTGTTCTTGGAGGTGGCTGAAGAAAATGGCTTGTGTTTCAGTGTAACGGAGAACTATGACAAAGAAGTCTGGAAACGTCATGAGGGATTCTTGAATGGAGAAGATAGGGACTCTTGGCCCAGTTATGAGAAAGGTCACAGCTATCCACTCTTAATCAGAATTACCCTTTGAACTTTCTTTCAGAGTACATTCTGCCTGGGGCCTCCTTTCATTGTTGGTTGACTCTTTTTAAAGATAAATTACAAATCTATTCCTCCAACAAAGGAAATCTCCAGTACTGACACTAACCGATTGCACGGTTATATATTNTTTTGTTGGGGTCACATCTTCAGTAGACACTGCTATTCTCATCCACGAAGACTCAAATGAATGTGAAGTTTATGCGGTGATTCATGTAAAGTGAAGATTTTAATTTCGGTCACAAAAGTACCCGAGATTATTAAAACANTTTTTTATCCCACTTGGTCTTAGCAACTTGCAAGAAAGGAGAAAAAAAAAAGTAATCAACAGTTCTGCATGTGGTAGACAATGCAATAGTATGTTAATAGTGATTAAAATGTTTACACTGCTATGTCCCGTTTATGATTAAAAAATGCCAGGTTAGNTGGATCATGTATGGATTGGTTGTGGTTTTATTATTGTGACGGTATGTTGGATCTACTGCTGGTTTCTGCACTGCAACTTTTGCCAGAAAAAAGGTTCCTTATCTTCTTTGAAGCATCATAGTTACAAGTAGAGAGCTTTTAGTAAGAGCAGTCCATTGAGTAAACAAAGCAACCCCACAAGTGGGATGAAGCTGTACTGTGTNAAAAGCTAGCAATNGATTCAATTAAACTAGAATTTATTTAATCCAAGTGGATTGATGCTTGCTTTTCTCTTGTATGTAATAGTAATGGGATGTGCTTTGTCTTTGCAGTGAGATTATGTATGAACATGACACAGGTCGGAATTCTTAGCTATTACGGAAGCAACAATTATTAGTGTTAATTTTCATTTTATTGCTTTGTCGATTGGACTTGTCTGAATGTCTCCTTGTACCCTTATCAAATTTTCTTACTACTTTCTACAAAAGAATGGTCTAGTGATCACTAGTGTCTCATTGAAAAAGGGTGGGGCCAGGGACAAGCTTAAGGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00073	297	3897	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K18826	CAMKMT	EC:2.1.1.60	Lysine degradation	map00310

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000073s00007757.1	PF10294.4	Methyltransf_16	2	148	1.40E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.652
SRR1783600	control	1.755
SRR1783602	moderate drought stress	1.317
SRR1811619	moderate drought stress	1.151

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.319
DRR006520	Root Summer glycyrrhizin high producing strain	3.114
DRR006521	Root Winter glycyrrhizin high producing strain	1.001
DRR006522	Root Winter glycyrrhizin high producing strain	0.964
DRR006523	Root Summer glycyrrhizin low producing strain	3.333
DRR006524	Root Summer glycyrrhizin low producing strain	3.336
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.245
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.171

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.961
SRR2868004	Drought Stress (root)	5.724
SRR2967015	Control (root)	4.950

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.682
SRR9715740	Leaf	7.495
SRR9715741	Leaf	5.139
SRR9715739	Root	0.593
SRR9715742	Root	2.597
SRR9715743	Root	3.391

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.366
SRR8749028	MeJA induced 9h	1.639
SRR8749029	MeJA induced 9h	1.834
SRR8749030	Uninduced	0.976
SRR8749031	Uninduced	0.033
SRR8749032	Uninduced	0.366

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.422
SRR8400027	Control - Root	6.425