Gene detail information of Glyur000072s00008154 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54770.1 | 8.00E-39 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | XP_007135352.1 | 2.67E-132 | hypothetical protein PHAVU_010G122000g [Phaseolus vulgaris] |
| COG | YP_003267833.1 | 3.00E-16 | RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q9SHZ6|UBA1A_ARATH | 3.00E-18 | UBP1-associated proteins 1A |
| trEMBL | tr|V7AT04|V7AT04_PHAVU | 1.00E-132 | Uncharacterized protein {ECO:0000313|EMBL:ESW07346.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00072 | 364201 | 366369 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000072s00008154.1 | PF00076.17 | RRM_1 | 22 | 89 | 1.40E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.045 |
| SRR1783600 | control | 0.045 |
| SRR1783602 | moderate drought stress | 0.188 |
| SRR1811619 | moderate drought stress | 0.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.136 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.090 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 53.198 |
| SRR2868004 | Drought Stress (root) | 38.318 |
| SRR2967015 | Control (root) | 34.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.011 |
| SRR9715739 | Root | 0.095 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.421 |
| SRR8749028 | MeJA induced 9h | 9.537 |
| SRR8749029 | MeJA induced 9h | 4.490 |
| SRR8749030 | Uninduced | 22.706 |
| SRR8749031 | Uninduced | 4.406 |
| SRR8749032 | Uninduced | 3.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.663 |
| SRR8400027 | Control - Root | 0.943 |