Gene detail

Gene detail information of Glyur000072s00008152

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16730.1	2.00E-84	terpene synthase 02
NR	KEH38236.1	1.62E-155	monoterpene synthase [Medicago truncatula]
Swissprot	tr\|Q93X23\|MYRS_QUEIL	3.00E-148	Myrcene synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A072V9D0\|A0A072V9D0_MEDTR	6.00E-156	Monoterpene synthase {ECO:0000313\|EMBL:KEH38236.1}

Sequence

Transcript Sequence

>Glyur000072s00008152.1
ATGAGAGTAACNGTGGAAAATGAACCTATATTGGATGAAGCAAGAGATTTTACCTTAAAATTTCTCAAAGAATTTGTGAACATGAATAGAGATAGTGACACATCACTCCTAATCAATCATGCTTTGGAGTTTCCATTGCAATGGAGNGTGCCAAGATGCGAGGCTTTATGGTTCATTAATTTTGTATTTGAGAGAAGGCAAAATGCGAGTCTTGCTTTCCTTCANTTTGCTAAATTGGATTTCAATATGGTTCAAAGCATCCACCAAGAAGAACTAAAGTGGTGGAAAGGAATTGGCCTCGTTGAAGAATTGAGTTTTGTTAGGGACANGTTGGTGGAGAATTTCGTTTGGGGCGTGGGAATGAATTTTAAGCCAGATCTTGGAAATTTCAGAAAAGCTGTAACAAAGGTCAATTCCTTTTTAACTACCATTGATGATATTTATGATGTATATGGTACCTTGGAAGAATTAGAACTCTTCACAGAAGCAATTGACAGAGTCCTAAAGGAAGAAGTTAGAATGATTCTTTGCAAATTGGTAGATCACGTTGATCAACTTAGAATGATTGATGTCTTGCAAAGGCTAGGAGTTTCTTATCATTTCAACAATGAAATAAGGAATATATTGGGAAATGTTCACAACAACATAGACACGTTGAAGGGGAAGAAGAATTTATATGCTACTGCCCTTGCTTTCAGGTTGTTAAGGCAACATGGATTCAATGTATCATCAGATGAAATGGGTAATTTCAAGAAATGTCTATCTCTTGACGTAGAAGGATTGTTATCATTGTATGAAGCCTCGTTTCATTTAGTGGAAAATGAACTTATATTGGAGGAAGCAAGAGATTTTACCGTAAAATTTCTCAGAGAATTTGTGAACACAAATAGAGACAGTGACACATCACTTCTAATCAATCAAGCTTTGGAGTTTCCATTGCAATTGAGGATGCCAAGATCGGAAGCTTTATGGTTCATTAATTTTGTATATGAAAGAGGGCAAAATGCGAGTCATGCTCTACATCAATTTGCTAGATTGGATTTCAATATGGTTCAAAACATCCACCAAGAAGAATTAAAGTGTATATCAAGGGATAGGTTGGTGGAGAATTTTGTTGTGGGCGTGGGAATGAATTTTAAACCCGATGTTGGAAATTTGAGAAATGTTATAACAAAGGTAAGTTCCTTTATAACCACCATTGATGATATTTATGATGTACATGGTACCTTGGAAGAATTAGAACTCTTGACAAAAACAGTTGACAGTTGGGATCTCAATGCTATGGATAATCTCCCACACTATATGAAAATATGCTTCCTTGCACTCTATAACTTTGTCAATGAAATTGCTTTCGTCAGCCTAAAGGAGAATGAGTATAACATCATTCCATATCTAAAGAAAGCGTGGGCTGATTTATGTAAGTCATATTTCATTGAGGCAAAATGGTACCACAATAGACACACGCCAACACTACAAGAATACATGGAGAATGCGTGGATATCCATAGGTGCACCTGTTGTTCTAATGCATGCTTACTTTTTTATCGCAACTCCATTAAAAATGGAGGATTTGGTTTGCTTAGAAGAACACCCCAACATAATTCGATATTCAGCAATTATTTTTCGCCTTGCGGATGACCTTGGAACATGCAAGGGGAAGAAGAATTTATATGCTACGGCCCTTGCTTTCAGGTTGTTAAGGCAACATGGATTCAATATGTTTTTGTTAGTTTTCCAAGATGAAATGGGTAATTTCAAGAAATGTCTATCTCTTGACGTAGAAGGATTGTTATCATTGTATGAAGCCTCGTTTCATTTAGTGGAAAATGAACTTATATTGGAGGAAGCAAGAGATTTTACCGTAAAATTTCTCAGAGAATTTGTGAACACAAATAGAGACAGTGACACATCACTTCTAATCAATCATGCTTTGGAGTTTCCATTGCAATTGAGGATGCCAAGATCGGAAGCTTTATGGTTCATTAATTTTGTATATATGAAAGAGGGCAAAATGCGAATTGGATTTCAATATGGTTCAAAACATCCACCAAGAAGAATTAAAGTGTATATCAAGTGGGCTGATTTATGTAAGTCATATTTCATTGAGGCAAAATGGTACCACAATAGACACACGCCAACACTACAAGAATACATGGAGAATGCGTGGATATCCATAGGTGCACCTGTTGTTCTAATGCATGCTTACTTTTTTATCGCAACTCCATTAAAAATGGAGGATTTGGTTTGCTTAGAAGAACACCCCAACATAATTCGATATTCAGCAATTATTTTTCGCCTTGCGGATGACCTTGGAACATGCAAGTCACTGAGTAGTGAATATACGGAAGAATTATATGGAAAGCAAAGCAGAGTGCTAAAGGAAGAATGCAGGGTAATTCTATGCAAACTGGTCAATCATGTTGAACAACTCGAGATGATTGATGCCATGCAAAGGCTTGGAGTTGCCTACCATTTCAACAATGAAATAAGGAAAATATTGCAAAATATTCACAACAATATGGACACATTAAAGGGGAAGAAGAATTTATATGCTACGGCCCTTGCTTTCAGGTTGTTAAGGCAGCATGGATTTAATGTATCGACAGATGTTTTTGATAGTTTTCAAGATGAAATGGGTGATTTCAAGAAATGCCAATCTGTTGATATCGAGGGATTGTTATCATTGTATGAANCCTCATTTCATTCANTGGAAAATGAACCTATATTGGATGAAGCAAGAGATTTTACCTTAAAATTTCTCACAGAATTTGTGAACATGGATAAAGGTAGTGACATGTCACTCCTAATCACTCATGCTTTGGAGTTTCCATTGCAATGGAGGGTGCCAAGATGCGAGGCTTTATGGTTTATTAATTTTCTAAATGAGAGAAGGCAAAATGTGAGCCATGCTTTACTTCAATTTGCTAACCTGGATTTCAACATGGTTCAAAGCATTCACCAAGACGAACTAAAATGGGATCTCAATGCTATGGATCGTCTCCCACGCTACATGCAAATATGCTTCCTTTCACTCAATAACTTTTGGGCTGATTTATGCAAGGCATTTTTCATTGAGGCAAAATGGTACCATAGTAGATACACGCCAAGACTGCAAGAATACATGGAGAATTCATGGATATCCATAAGTGCACCTGTTATATTAATGCATGCTTGCTTTTTTATTCCAACTCCACTAAAAAAGGAGGATTTGGCTTACATAGAAGAATACCCCAACATAATTCGATATTCAGCAATTATTTTACGCCTTGCAGATGACCTAGGAACATGCGAGCGTGAGATGACGGCTGGTGATGTTTCTAAATCAATTGAATGCTACATGAATGAAACTGGAGCTTCTGAAGCAGAAGCACGCGAGCACTTGAAGTGCATGCTACGTGAAACGTGGAAAAAGATGAATGAAGAAACTCTTAATTCTCCATTCCCTGAGAGTTTTATTGATATTGCTATAAACCTTGGAAGAGTTTCACTGTTCTTTTACCAGTATGGAGATGGTTATTCAATACAAGATGATGAAACTAACAGTCGCATGCAATCATTGGTTATGCAACCTCTTTCAGTCATATCTAAATAGAAATATGTTGATAATAGGTAATAACTTGAATAGAGTTTCCTATAGTCCTTAATACTATTCAACTCTAGATGAGATGTTGGCTTATTCTGCTACTAGATGTTCGTTGCTCATGCTCTGGATGGTAGATTTTTTTTTTCTTTCTGGTTTGCTGTGATTCTAGACTGGGGAGAATTTTTTGTGCTTGTGCTATTTTAAATAGTTTGAAGCTATGGGATTTTGATTTCTGTTGACTGCTGTCTTGGGGGATTGAAAANTCTGTTTCAGGTCTTGCTATGAAATGGCTACAACAATTCTACTAATTATTGGAATTTGGAATATGCATAATGACAATTGTTCTTGTGGGTTCAATAATTGTGCTCAACTCTACTTCTGTTGTTAAGGTGTTTTGGGGATGATTTTTTTGCCTTTGGTCTTGTTATATTGATCAAGATGTTTAAGAGGCTTAAAGTACAACTAACAAGTGGTATGAATAAT

Protein Sequence

>Glyur000072s00008152.1
MRVTVENEPILDEARDFTLKFLKEFVNMNRDSDTSLLINHALEFPLQWXVPRCEALWFINFVFERRQNASLAFLXFAKLDFNMVQSIHQEELKWWKGIGLVEELSFVRDXLVENFVWGVGMNFKPDLGNFRKAVTKVNSFLTTIDDIYDVYGTLEELELFTEAIDRVLKEEVRMILCKLVDHVDQLRMIDVLQRLGVSYHFNNEIRNILGNVHNNIDTLKGKKNLYATALAFRLLRQHGFNVSSDEMGNFKKCLSLDVEGLLSLYEASFHLVENELILEEARDFTVKFLREFVNTNRDSDTSLLINQALEFPLQLRMPRSEALWFINFVYERGQNASHALHQFARLDFNMVQNIHQEELKCISRDRLVENFVVGVGMNFKPDVGNLRNVITKVSSFITTIDDIYDVHGTLEELELLTKTVDSWDLNAMDNLPHYMKICFLALYNFVNEIAFVSLKENEYNIIPYLKKAWADLCKSYFIEAKWYHNRHTPTLQEYMENAWISIGAPVVLMHAYFFIATPLKMEDLVCLEEHPNIIRYSAIIFRLADDLGTCKGKKNLYATALAFRLLRQHGFNMFLLVFQDEMGNFKKCLSLDVEGLLSLYEASFHLVENELILEEARDFTVKFLREFVNTNRDSDTSLLINHALEFPLQLRMPRSEALWFINFVYMKEGKMRIGFQYGSKHPPRRIKVYIKWADLCKSYFIEAKWYHNRHTPTLQEYMENAWISIGAPVVLMHAYFFIATPLKMEDLVCLEEHPNIIRYSAIIFRLADDLGTCKSLSSEYTEELYGKQSRVLKEECRVILCKLVNHVEQLEMIDAMQRLGVAYHFNNEIRKILQNIHNNMDTLKGKKNLYATALAFRLLRQHGFNVSTDVFDSFQDEMGDFKKCQSVDIEGLLSLYEXSFHSXENEPILDEARDFTLKFLTEFVNMDKGSDMSLLITHALEFPLQWRVPRCEALWFINFLNERRQNVSHALLQFANLDFNMVQSIHQDELKWDLNAMDRLPRYMQICFLSLNNFWADLCKAFFIEAKWYHSRYTPRLQEYMENSWISISAPVILMHACFFIPTPLKKEDLAYIEEYPNIIRYSAIILRLADDLGTCEREMTAGDVSKSIECYMNETGASEAEAREHLKCMLRETWKKMNEETLNSPFPESFIDIAINLGRVSLFFYQYGDGYSIQDDETNSRMQSLVMQPLSVISK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00072	312546	360886	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0000287 magnesium ion binding

GO:0010333 terpene synthase activity

GO:0016829 lyase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000072s00008152.1	PF03936.11	Terpene_synth_C	74	176	2.60E-28
Glyur000072s00008152.1	PF01397.16	Terpene_synth	167	306	1.60E-42
Glyur000072s00008152.1	PF03936.11	Terpene_synth_C	341	554	3.50E-52
Glyur000072s00008152.1	PF01397.16	Terpene_synth	551	644	9.20E-25
Glyur000072s00008152.1	PF03936.11	Terpene_synth_C	691	790	4.20E-18
Glyur000072s00008152.1	PF01397.16	Terpene_synth	779	940	6.90E-49
Glyur000072s00008152.1	PF03936.11	Terpene_synth_C	992	1139	7.20E-34
Glyur000072s00008152.2	PF03936.11	Terpene_synth_C	74	176	1.70E-28
Glyur000072s00008152.2	PF01397.16	Terpene_synth	167	306	1.00E-42
Glyur000072s00008152.2	PF03936.11	Terpene_synth_C	341	554	2.40E-52
Glyur000072s00008152.2	PF01397.16	Terpene_synth	551	644	6.10E-25
Glyur000072s00008152.2	PF03936.11	Terpene_synth_C	691	816	3.00E-33
Glyur000072s00008152.3	PF03936.11	Terpene_synth_C	74	178	1.00E-28
Glyur000072s00008152.3	PF01397.16	Terpene_synth	167	306	5.70E-43
Glyur000072s00008152.3	PF03936.11	Terpene_synth_C	341	593	3.40E-67
Glyur000072s00008152.4	PF03936.11	Terpene_synth_C	74	314	5.50E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.710
SRR1783600	control	2.694
SRR1783602	moderate drought stress	11.274
SRR1811619	moderate drought stress	11.129

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.145
DRR006520	Root Summer glycyrrhizin high producing strain	4.302
DRR006521	Root Winter glycyrrhizin high producing strain	0.589
DRR006522	Root Winter glycyrrhizin high producing strain	0.492
DRR006523	Root Summer glycyrrhizin low producing strain	15.004
DRR006524	Root Summer glycyrrhizin low producing strain	15.126
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.899
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.067

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.901
SRR2868004	Drought Stress (root)	18.513
SRR2967015	Control (root)	18.863

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.594
SRR9715740	Leaf	0.332
SRR9715741	Leaf	6.737
SRR9715739	Root	0.088
SRR9715742	Root	4.805
SRR9715743	Root	4.587

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	55.089
SRR8749028	MeJA induced 9h	66.643
SRR8749029	MeJA induced 9h	37.054
SRR8749030	Uninduced	30.141
SRR8749031	Uninduced	14.732
SRR8749032	Uninduced	16.697

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.036
SRR8400027	Control - Root	13.099