Gene detail

Gene detail information of Glyur000072s00008147.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72300.1	0	Leucine-rich receptor-like protein kinase family protein
NR	XP_003528747.1	0	PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max]
COG	YP_004775215.1	5.00E-38	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9C7S5\|PSYR1_ARATH	0	Tyrosine-sulfated glycopeptide receptor 1
trEMBL	tr\|I1KHK9\|I1KHK9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G05280.1}

Sequence

Transcript Sequence

>Glyur000072s00008147.1
ATGATACCCTTATGTTCCCCTTCTCCTTCTTCTGCTCCCCTTTCTCTTATGAGGAAGGATCAAAGCAAAGATTCAAACTTTACCTTGTGGGCATCTCTTGTTCTTCTCATGAGATCACTCTCACCCTCAACCTCAACAACCCCATCAACATCACCTTCTTCTTCTTCCTCTTATGCATATTCCACTTGCAATTACATGGTTTCCAAGCTACTTCTTCTTGTTCTGTCCTTGTTGGTTGTTCAAGTCTCATCCCTTTGTAACCAAATTGACAAAGACTCACTCTTGGCCTTCTCTGGGAACATATCCACTTCTTCACCTCACCCACCTCTCAATTGGTCTTCTTCCTCTGATTGTTGCCATTGGGAAGGCATAACTTGTGATGATGGGGATCACCGTGTCACCCATCTTTTGCTACCCTCTAGAGGCCTCACTGGTTCCCTCTCCCCATCTCTCACAAGCCTTGATGCTCTCTCCCATCTCAATCTCTCACATAACCGGTTATCTGGTAACCTCCAAAACCGGTTTTTCTCACTGCTCAATCACCTTCTGGTTCTTGATTTNAGCTATAACCGTCTCTCTGGTGAGTTGCCACCTTTTGTTAGCAGCAGCAATAGCAGTGGTGTTGGTGTTATTCAGGAGNTGGACTTGTCTAGCAATTCATTCAATGGAACACTGCCACCTTCTCTACTTGAGCACTTGGCAGCTGCAGCAGCAGAAGGGAGTTTGGTAGCTTTNAATGTTAGTAACAACAGCTTCACAGGTCAAATTCCCACTTCCCTCTTTTGCATTAATGACCATAACTNCTCCTCTTTAAGATTCTTGGACTATTCCTCCAATGATTTTGATGGTAAGATTCAGCCTGGCCTAGGGGCATGTTCCAAGCTAGAGAGATTTCGAGCAGGTTTCAATTTTTTATCTGGGACTATCCCAAGTGATGTTTTTGATGCTGTTTCTCTCACTGAAATCTCATTGCCACTCAATAGACTCACTGGAACTATTGGTGATGGCATTGTTAGCCTTACAAACCTCACTGTTTTGGAGCTCTACTCCAATCACTTGACAGGCCCTATTCCCAGGGATATTGGTAAGCTTTCCAAATTGGAAAGGCTACTTCTTCATGTCAACAACTTGACAGGTACTATGCCCCCATCTCTGATGAACTGTGTCAATCTTGTGGTGTTGAATTTGAGGGTCAACAAGTTGGAGGGGAACCTCTCAGCATTCAATTTCTCAGGACTCCTAAGACTTGCTACACTTGACCTTGGCAACAATAGATTCACTGGTGTTTTGCCACCGACCCTTTATGCTTGCAAGTCACTTGCAGCAGTGAGGCTTGCATCTAACCAACTTGACGGACAGATTTCACCTGAGATACTTGGACTTGAGTCTCTGTCCTTTTTATCAATTTCCACCAACAAGCTGAGGAATATCACTGGGGCTCTGAGGATACTCACTGGGCTCAAGAAGCTTAGCACCCTTATGCTCTCCAAGAATTTCTTCAATGAAATGATACCAAATGGTGAAAACGTAGTAGACCCTGATGGATTCCAAAAGATCCAGGTTCTAGGCTTGGGTGGTTGTGAGTTCACAGGNCAAATACCAGGTTGGCTTGCAAATCTGAAGAAGCTTGAGGCCTTGGACCTGTCCTATAACAAAATTAGTGGTCCAATCCCTCCTTGGTTGGGTACACTTCCTCAGCTTTTCTACTTAGACTTGTCTGTTAACCACCTTACAGGAGCAGTTCCCATGGAGCTCACAAGACTCCCAGCACTAACATCACAACAGGCAAATGATAAAGTAGAAAGGACTTACTTGGAGTTACCTGTCTTTGCTAATGCCAACAATGTTTCACTGTTGCAATATAATCAGCTTTCTAGCCTACCACCGGCTATATATCTCGGAAGCAATCGCCTCAGTGGCAGCATCCCAATTGAGATTGGCAACCTGAAAGTCCTTCATCAGCTGGACCTGAAGAAAAACAACTTCTCTGGTGATGTACCAGAGCAAATTTCAAACTTGACTAACTTAGAGAAGCTAGACCTCTCAGAAAACCAACTATCTGGTGAAATTCCTGATTCACTCAAAAGATTGCATTTCTTGTCTTTTTTCAATGTAGCATACAATAATCTTCAAGGACAGATACCAACAGGTGGTCAATTTGACACTTTCTCCTCCTTTAGCTTTGAAGGAAACCCGCAATTGTGTGGTTCGGTTATTCAGCGCTCTTGTCCTTCTCAGCAAAACACTACTAGTGCTGCAGGTAGTGGCAGGTCAAACAAAAAAGTAATGATCATACTTATTATTGTAGTCTGTTTTGGCATAGCTACCTTGATGACATTGTTGACACTGTGGATACTATCCAAGAGGAGGGTCAATCCAGGAGGAGTTTCTGATAAGATTGAACTGGAATCGATTTCAACCTTCTCCAACAACGGGGTTCATCCTGAGGTTGACAAGGAGGCTAGCGTAGTGGTATTGTTCCCCAATAAAACTAATGAAACCAAGGATCTTTCCATATTTGAGATCATAAAAGCCACTGAAAATTTCAGTCAGGCAAATATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACATTACCAAATGGAACTACGCTAGCCATCAAGAAACTTTCAGGAGATTTGGGCCTCATGGAAAGGGAATTCAAAGCAGAAGTAGAGGCTTTGTCAACAGCACAACATGAGAATCTGGTGGCATTGCAAGGCTACTGTGTGCACGACGGTTTTCGGCTTCTCATGTATAATTACATGGAGAATGGAAGTCTGGATTACTGGTTACATGAAAAGGCTGATGGCGCATCTCAACTCGATTGGCCTACTCGTTTGAAGATTGCGCAAGGAGCAAGTTGTGGTTTGGCTTATTTGCATCAGATATGCGAACCACACATTGTGCACCGTGATATAAAGTCAAGCAACATACTCCTTGATGAAAAGTTTGAGGCACATGTTGCTGATTTCGGTTTGTCCCGGTTGATTCTTCCATATCATACTCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATACCCCCAGAGTATGGACAAGCATGGGTGGCTACTCTGAGAGGAGATGTNTACAGCTTTGGGGTTGTCATGCTTGAGCTACTCACTGGGAGGAGGCCTATGGATGTATGTAAACCAAAAATGTCAAGGGAGTTGGTTGGCTGGGTTCAACAGATGAGAAGTGAAGGAAAACAAGATCAAGTCTTTGACCCTCTTCTGAGAGGGAAGGGCTTTGAAGGAGAGATGCTGCAGGTACTTGATGTGGCCTGCATGTGTGTCAGCCACAACCCTTTTAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGCTAAAGAATGTAGGATCAGCCAACCAACACAGAAATAAAGACTAG

Protein Sequence

>Glyur000072s00008147.1
MIPLCSPSPSSAPLSLMRKDQSKDSNFTLWASLVLLMRSLSPSTSTTPSTSPSSSSSYAYSTCNYMVSKLLLLVLSLLVVQVSSLCNQIDKDSLLAFSGNISTSSPHPPLNWSSSSDCCHWEGITCDDGDHRVTHLLLPSRGLTGSLSPSLTSLDALSHLNLSHNRLSGNLQNRFFSLLNHLLVLDXSYNRLSGELPPFVSSSNSSGVGVIQEXDLSSNSFNGTLPPSLLEHLAAAAAEGSLVAXNVSNNSFTGQIPTSLFCINDHNXSSLRFLDYSSNDFDGKIQPGLGACSKLERFRAGFNFLSGTIPSDVFDAVSLTEISLPLNRLTGTIGDGIVSLTNLTVLELYSNHLTGPIPRDIGKLSKLERLLLHVNNLTGTMPPSLMNCVNLVVLNLRVNKLEGNLSAFNFSGLLRLATLDLGNNRFTGVLPPTLYACKSLAAVRLASNQLDGQISPEILGLESLSFLSISTNKLRNITGALRILTGLKKLSTLMLSKNFFNEMIPNGENVVDPDGFQKIQVLGLGGCEFTGQIPGWLANLKKLEALDLSYNKISGPIPPWLGTLPQLFYLDLSVNHLTGAVPMELTRLPALTSQQANDKVERTYLELPVFANANNVSLLQYNQLSSLPPAIYLGSNRLSGSIPIEIGNLKVLHQLDLKKNNFSGDVPEQISNLTNLEKLDLSENQLSGEIPDSLKRLHFLSFFNVAYNNLQGQIPTGGQFDTFSSFSFEGNPQLCGSVIQRSCPSQQNTTSAAGSGRSNKKVMIILIIVVCFGIATLMTLLTLWILSKRRVNPGGVSDKIELESISTFSNNGVHPEVDKEASVVVLFPNKTNETKDLSIFEIIKATENFSQANIIGCGGFGLVYKATLPNGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHDGFRLLMYNYMENGSLDYWLHEKADGASQLDWPTRLKIAQGASCGLAYLHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPMDVCKPKMSRELVGWVQQMRSEGKQDQVFDPLLRGKGFEGEMLQVLDVACMCVSHNPFKRPSIREVVEWLKNVGSANQHRNKD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00072	283582	286983	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000072s00008147.1	PF08263.7	LRRNT_2	90	127	5.00E-08
Glyur000072s00008147.1	PF00560.28	LRR_1	157	177	0.51
Glyur000072s00008147.1	PF13855.1	LRR_8	519	577	3.20E-08
Glyur000072s00008147.1	PF12799.2	LRR_4	652	687	1.20E-06
Glyur000072s00008147.1	PF00069.20	Pkinase	852	1118	2.00E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.163
SRR1783600	control	8.290
SRR1783602	moderate drought stress	10.157
SRR1811619	moderate drought stress	9.987

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.382
DRR006520	Root Summer glycyrrhizin high producing strain	18.147
DRR006521	Root Winter glycyrrhizin high producing strain	7.002
DRR006522	Root Winter glycyrrhizin high producing strain	6.858
DRR006523	Root Summer glycyrrhizin low producing strain	36.199
DRR006524	Root Summer glycyrrhizin low producing strain	36.148
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.194
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.146

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.782
SRR2868004	Drought Stress (root)	48.383
SRR2967015	Control (root)	43.897

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.966
SRR9715740	Leaf	7.856
SRR9715741	Leaf	6.573
SRR9715739	Root	9.737
SRR9715742	Root	22.507
SRR9715743	Root	21.581

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.351
SRR8749028	MeJA induced 9h	20.311
SRR8749029	MeJA induced 9h	4.771
SRR8749030	Uninduced	18.965
SRR8749031	Uninduced	8.920
SRR8749032	Uninduced	5.697

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.874
SRR8400027	Control - Root	17.607