Gene detail

Gene detail information of Glyur000072s00008142

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46890.1	4.00E-119	Protein of unknown function (DUF1295)
NR	XP_003637333.1	0	hypothetical protein MTR_082s0014 [Medicago truncatula]
COG	YP_006347403.1	8.00E-32	hypothetical protein Theba_2560 [Mesotoga prima MesG1.Ag.4.2]
trEMBL	tr\|G7ZZ33\|G7ZZ33_MEDTR	0	3-oxo-5-alpha-steroid 4-dehydrogenase {ECO:0000313\|EMBL:KEH18529.1}

Sequence

Transcript Sequence

>Glyur000072s00008142.1
CCCTGCACAGGATCGAAACTTGGGCGAGACATCATACAATGGCTAGTACTAGTAGTCGCAATGTGAAGAACGCTGTGATAGCATTATTGGTTCCTCTTCCCTCCATCCTCTTCTATCTCTCATTCCTCAACAACTACGACTCAGCAATTGCCACTGGGGGGAGGGTTGACCCATCTTTTTGGTCAACTCTATGGGCGTGGTGCTATCACCACCCTCTCCTCTTAGCCAATGCTCTCTTCTTCCTCAACGTCAATCTCCTCTTCTGGATCATCGGCCAAATCCAATCTAGTCACTGGATGATTGACCCATTTTGGACAGTGATACCTGTCATGCTTGTTCATTACTATGCAACTCACCCTTTGGCTCACTATGATTGGTGGAGGTCCAGGATTGTGATCCTCTTGACTTGGGTGTGGAGTATCAGGCTCACTCATAACTACTTCAGGCGTGAAAGGTGGCAATGGGGTGCTAGGGAGGANTGGCGTTTCACTGAGATGAGCCAACAGTATGGGAAGCAATGGTGGTGGGTTTCCTTCTTTGCTGTTTATGTCTCCCAGCAGATGTTTTTGATCGGACTGTCCCTTCCCTTATATGTTGTGCACTCTGTCAATCAGCCTTTGAGCATTTGGGACTTGGTAGCTATTGTTGTCTGTTTATGTGGCATTGTTATAGCATACTTTGCTGATACACAGCTCCATGACTTCATGAGTAGAAACAACAAGCTGAAAGGGCTTGGTAAGCCTTTGGTCCCTGTCCTTGACAATGGCTTGTGGTATTACTGCCGGCATCCGAATTACCTCGGTGAGCAGCTGTGGTGGTGGGGACTGGTTGTATTTGCATGGAGCCTGGGACATGGATGGACTTTCATTGGTGCATTGGTTAACACCNTGTGTTTGGCTTATGTGACTAGGCTTGTGGAGGACCGAATGTTGAGACAAGAAAGTAGAGCAAAGGCNTTTAGGCTGTATCAGAAGACCACTTCAGTGTGGATACCTTGGTTCAAGTCATCTCCTTCATCAGGAGTAAAAAATAAGAATGTTTGATGTTTTTCCTAGTGCAATGGTTGGTTTTGTAAAATCATCGTCTTGGTATCCTACTAGTGTTGCTATTGTTCTGTCTTGTTTATTTAATGGAATCACGAATTGTNTGTGTTCTAGACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00072	263287	264949	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

cellular_component

GO:0005737 cytoplasm

GO:0016021 integral component of membrane

molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000072s00008142.1	PF06966.7	DUF1295	75	314	5.60E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.188
SRR1783600	control	2.181
SRR1783602	moderate drought stress	2.003
SRR1811619	moderate drought stress	1.954

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.633
DRR006520	Root Summer glycyrrhizin high producing strain	6.747
DRR006521	Root Winter glycyrrhizin high producing strain	0.864
DRR006522	Root Winter glycyrrhizin high producing strain	0.938
DRR006523	Root Summer glycyrrhizin low producing strain	8.715
DRR006524	Root Summer glycyrrhizin low producing strain	8.500
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.358
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.400

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.735
SRR2868004	Drought Stress (root)	32.387
SRR2967015	Control (root)	27.199

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.960
SRR9715740	Leaf	1.550
SRR9715741	Leaf	4.405
SRR9715739	Root	10.724
SRR9715742	Root	6.237
SRR9715743	Root	6.295

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.447
SRR8749028	MeJA induced 9h	7.381
SRR8749029	MeJA induced 9h	4.678
SRR8749030	Uninduced	1.978
SRR8749031	Uninduced	0.672
SRR8749032	Uninduced	1.455

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.148
SRR8400027	Control - Root	7.796