Gene detail information of Glyur000072s00008140 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61470.1 | 1.00E-102 | photosystem I light harvesting complex gene 2 |
| NR | AFK45885.1 | 3.52E-153 | unknown [Lotus japonicus] |
| Swissprot | tr|P10708|CB12_SOLLC | 4.00E-152 | Chlorophyll a-b binding protein 7, chloroplastic (Precursor) |
| trEMBL | tr|I1KHL4|I1KHL4_SOYBN | 9.00E-155 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G05320.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00072 | 253432 | 254989 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000072s00008140.1 | PF00504.16 | Chloroa_b-bind | 90 | 256 | 4.20E-51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.402 |
| SRR1783600 | control | 0.493 |
| SRR1783602 | moderate drought stress | 0.509 |
| SRR1811619 | moderate drought stress | 0.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.912 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.896 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.133 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.130 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.539 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.383 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1499.618 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1481.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.645 |
| SRR2868004 | Drought Stress (root) | 27.540 |
| SRR2967015 | Control (root) | 4.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1330.944 |
| SRR9715740 | Leaf | 1498.944 |
| SRR9715741 | Leaf | 1049.714 |
| SRR9715739 | Root | 1.200 |
| SRR9715742 | Root | 3.024 |
| SRR9715743 | Root | 3.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.269 |
| SRR8749028 | MeJA induced 9h | 1.404 |
| SRR8749029 | MeJA induced 9h | 2.054 |
| SRR8749030 | Uninduced | 0.432 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.622 |
| SRR8400027 | Control - Root | 9.372 |