Gene detail

Gene detail information of Glyur000072s00008129

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01030.1	6.00E-54	AP2/B3-like transcriptional factor family protein
NR	XP_007135337.1	1.08E-154	hypothetical protein PHAVU_010G120900g [Phaseolus vulgaris]
Swissprot	tr\|O82799\|NGA1_ARATH	2.00E-71	B3 domain-containing transcription factor NGA1
trEMBL	tr\|V7ANU2\|V7ANU2_PHAVU	4.00E-155	Uncharacterized protein {ECO:0000313\|EMBL:ESW07332.1}

Sequence

Transcript Sequence

>Glyur000072s00008129.1
CCTTACAAATCTCCAGGGGGTTAATAATTAGCAGAATTCAGTCTTATAATTTCATGGAGTTGATGCAAGAGGTGAAAGGGTATTCTGATAGCAGAGAAGAGGAGGAGGAAGAGGAAGCAGCNGAAGAAGAAGAAATCATCACAAGAGAAGAAGAAAGCAGCAGGTTGTTACAACACCAGCAGCACCACCACCAAGATGCAGCCTCCAATTCCACCACCAATCACACAAATCTAAAGCAGCTAGACTTCATGGAATTGTCACTTGGGAACAACAACAACAACAACAACAACAAAGATGCTATTGCTAGTGATGAAGCCAATTTCCAACATGGATCAGGTTCTGGTGCTGCTCCTCCTCCTCTTTATGCTCATGCAGTAGCAACTGTTCCTGGTGGTTCTTCTTCTTCTGCTAACCAGCCTACTGAGAAAGAGCACATGTTTGATAAAGTGGTGACGCCNAGTGATGTGGGGAAGCTGAACAGGTTGGTGATACCAAAACAGCATGCTGAGAAGTACTTCCCTCTTGATTCCACTGCAAATGAGAAAGGGCTTTTGCTCAATTTTGAGGACAGGAATGGGAAGCTGTGGAGGTTCAGGTACTCTTACTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCCANCGTGGTGTTGGGGAATTGTATAGGCATAGGTTGTACATAGATTGGAGGAGAAGGACTAATCACAATAACATTCANGAGTACCAGTACCACCACCCTGTTGAATATCCTTCCTCAACACCCACCACACTCTTCACACCTTTCTTTCTTCCCAACCAGCCACTGCCTGCACACTTGTCATCACAGTACTCCATGATCAGGTGGGGTAGTCCCACTACTTCTGCTGCCACTGGCAGATTGTACTCACTCCCTTCCCCACAACTGCCACCAAGGCACCACCACCACCATGACCCTTTGCAGCAGCAGCAGCAGCAGCACCTCAGTTACAATTACCATATGTATCCATTTCATAATCACCATGGTGGTGGTGGGAGTCACCATCACTATAATTATCATCATGATCATAATCCACTGAGTACTTCAGGATCTGCTGGTGGTTCAGTCTATTACCTGAGGTCAGCACCACCACCATCAATGCCAATGGCTGATACAATTGCAAGGCAGCACCAACAAGGAGGAGGAGTAAATATTGCAGCCCCAATGATAATTGATTCTGTTCCAGTTTCTCATCATCATCACCATGGTGGTGGTGGTAAGGGTGGTTCTAGTAGTANCAGTAGTCCTAAACGGCTAAGGCTATTTGGGGTGAACATGGAATGTGGTTCTTCTTCTTCACCATCTGAAGAAGACCCCAAATGTTGTAGCTTGTTGTCCTCAACTTCTGTAGCACATNTGGCAATGGCTAATAATTCACTTCCCTCTTCTTCTCTACCACCTCTTCATCAGCGTTTGAGGGTACCCCATGAAGACACACTTTCTTCACCATCAACAAGGTTTGGGGATCAGAGAGGGGAAGCTTCAATGCTTTTTGATTTAGACCCCTCTTTGCAATACCGGCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00072	201178	203533	+

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000072s00008129.1	PF02362.16	B3	129	233	8.30E-28
Glyur000072s00008129.2	PF02362.16	B3	204	308	1.00E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.519
SRR1783600	control	0.494
SRR1783602	moderate drought stress	0.692
SRR1811619	moderate drought stress	0.734

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.041
DRR006520	Root Summer glycyrrhizin high producing strain	0.885
DRR006521	Root Winter glycyrrhizin high producing strain	0.992
DRR006522	Root Winter glycyrrhizin high producing strain	0.991
DRR006523	Root Summer glycyrrhizin low producing strain	0.104
DRR006524	Root Summer glycyrrhizin low producing strain	0.107
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.219
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.244

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.750
SRR2868004	Drought Stress (root)	2.553
SRR2967015	Control (root)	1.896

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.417
SRR9715740	Leaf	5.146
SRR9715741	Leaf	7.038
SRR9715739	Root	0.310
SRR9715742	Root	1.358
SRR9715743	Root	0.848

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.707
SRR8749028	MeJA induced 9h	17.363
SRR8749029	MeJA induced 9h	9.298
SRR8749030	Uninduced	7.866
SRR8749031	Uninduced	4.426
SRR8749032	Uninduced	4.330

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.955
SRR8400027	Control - Root	1.273