Gene detail

Gene detail information of Glyur000072s00008118

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46820.2	4.00E-32	photosystem I P subunit
NR	KDP28405.1	5.57E-72	hypothetical protein JCGZ_14176 [Jatropha curcas]
COG	YP_007118737.1	1.00E-07	glutamyl-tRNA synthetase [Oscillatoria nigro-viridis PCC 7112]
Swissprot	tr\|Q8LCA1\|CUT1B_ARATH	2.00E-49	Protein CURVATURE THYLAKOID 1B, chloroplastic (Precursor)
trEMBL	tr\|A0A067K802\|A0A067K802_JATCU	2.00E-72	Uncharacterized protein {ECO:0000313\|EMBL:KDP28405.1}

Sequence

Transcript Sequence

>Glyur000072s00008118.1
AGAGGATCTCCACATTCATTTGCAAATTATTATCAAACATAATTGAGACTAATATGCCAAGAAAAATATTAGAAAACAGAGGAAATATACCAATAAACTTGAGCTATATTCTCTCCCTTGTGGACTCAAAGAGTCTTTCATAGGACAGTAAAATTATTATTAGCCTGAAATTAAGGGGATTGTTCACTAACAAACAGCAATGGCCTCAACCTCTTCCTCTGCTCTCACTATATCCTCTTCATCCACCCTTGTTGATGGCAAGGCCTCAAGACAATCACCAGCTTCTTCTCCACAATGTGTGACCCTTCCCACTCTTCCCCCTCCCCTTGTGCAGTCTCATCAGAATCGTGCATTGAAGACTACCAGTGCTCATTGTGAGGCACCAGCAGAAGTTGCCACAACTGAGACTCCAGAGTTTGTCAAGACTCTTCAAGAAGCTTGGGAAAAAGTTGATGATAAGTATGCAGTGAGTTCACTGGCCGTGGCTAGTGTGGTTGCACTATGGGGCTCAACCGGGTTGATCTCAGCAATTGATAGACTTCCCTTGATTCCTGGGGTTCTTGAGGTTGTAGGCATTGGCTACACTGGGTGGTTTGCATACAAGAACCTAGTTTTCAAGCCAGACAGGGAAGCTCTTGTACGGAAAATAAAAGGAACATTTAATGAAATAATTGGGAGCAGCTAAAAGAGTTATTAGAAAATGCTGAGATGCCGTTGGCATGGTAGAGTTCTGTTTTGCAGCATCCTGTTGAAGATGTCATGATCATGCTTCATTTTGTAGCCATATAAGCTTTTCTGACCATTCCTTTATCCCATGTAATGTAATATGTTCNGAAAAAAAATTGTATCTTCTTATATATATACCGATCCACTTTAAGACATTTTCTCNATTATCTGTAGTGCATGATTACAAAAAAAGGATAATCAGGTGGCAATAAAACTNGTCATGGCCAGAGTCCACGGAAAGGTGANACCCAACACTAGCAGATGCTTTATTAATTATGTAGCATATAGTNATTATTACAANAGCAGTGATACACTGACCACCAATCACGCATCCCACACCTCATCCCAATGAAGTGATGGNTGTGGGATGGGGGTCCATCCCTCGTTCCCGTTATTACAATGCAATGATAGATGATAGAAGAACAATATGAGCAATGCTAGGTACCTATGTCTACTTNAAGAACTCCATAACCCAAAGGCCAAAGATACAACAGACGAATTTGATGCCACTAAATCCAGCTCTTAATGCCAATTCCAAGAATTCATTTTGGGTTCGCTCTTTTNCTCCTGGGTTTTGAATCNTCATGNCAAGGTTAACGTNGGTAATCNTCTTGGCAATAATTGTACCCTCAGGCAAAACGGGAAGANTCAGGTCCGAAACAATAACTTTCCCATCATTAGGAATAGCTTTATAGCAATTCTTCAACAACTTCAAACATTCTTCGTCATTCCANTTGTGAAGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00072	119977	122640	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000072s00008118.1	PF14159.1	CAAD	75	159	1.80E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.747
SRR1783600	control	0.842
SRR1783602	moderate drought stress	1.046
SRR1811619	moderate drought stress	0.999

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.368
DRR006520	Root Summer glycyrrhizin high producing strain	0.435
DRR006521	Root Winter glycyrrhizin high producing strain	0.300
DRR006522	Root Winter glycyrrhizin high producing strain	0.148
DRR006523	Root Summer glycyrrhizin low producing strain	0.300
DRR006524	Root Summer glycyrrhizin low producing strain	0.150
DRR006525	Leaf Summer glycyrrhizin high producing strain	331.506
DRR006526	Leaf Summer glycyrrhizin high producing strain	330.393

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.367
SRR2868004	Drought Stress (root)	5.465
SRR2967015	Control (root)	2.071

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	170.229
SRR9715740	Leaf	194.039
SRR9715741	Leaf	95.944
SRR9715739	Root	0.593
SRR9715742	Root	0.460
SRR9715743	Root	0.664

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.748
SRR8749028	MeJA induced 9h	1.720
SRR8749029	MeJA induced 9h	3.090
SRR8749030	Uninduced	0.290
SRR8749031	Uninduced	0.208
SRR8749032	Uninduced	1.006

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.962
SRR8400027	Control - Root	7.005