Gene detail

Gene detail information of Glyur000072s00008113

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46800.2	2.00E-72	zinc transporter of Arabidopsis thaliana
NR	XP_006582912.1	0	PREDICTED: uncharacterized protein LOC100790458 isoform X1 [Glycine max]
COG	YP_004981061.1	1.00E-25	cation diffusion facilitator family transporter [Geobacillus thermoleovorans CCB_US3_UF5]
Swissprot	tr\|Q688R1\|MTP1_ORYSJ	2.00E-164	Metal tolerance protein 1
trEMBL	tr\|I1KHN9\|I1KHN9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G05510.1}

Sequence

Transcript Sequence

>Glyur000072s00008113.1
ATGGAAGCACAAAGCTCTCAGCATGGGCAAATTATTGAAATCAGTGGAGATCTTCCTGATGCAGGAAGGAAGATTTGTGGGGAAGCACCATGTGGGTTCGCAGATGCTGGATCCATCTCTAAGGATTCCGAAGAACGATCAACTTCCATGCGGAAGCTTTTCATGGCAGTGACCCTTTGTGTTATTTTCATGGCCGTTGAACTAGTCGGTGGCATCAAAGCTAACAGTCTTGCAATATTGACTGATGCAGCACATTTGCTTTCAGATGTTGCTGCATTTGCCATCTCCTTATTTTCTCTATGGGCTGCGGGATGGGAAGCTAATCCTCGTCAGTCATATGGATTTTTTAGAATAGAGATTCTTGGTGCTCTGGTTTCTATCCAATTAATATGGCTGCTTGCTGGGATTCTGGTATACGAAGCCATTGATAGACTCATTGCNGGTCCTCAAGAAGTGGATGGTTTTTTAATGTTTTTAGTTGCTGCATTTGGTCTTGTGGTTAACATCATTATGGCTTTGTTATTGGGTCATGATCACAGCCATGGCCATGNCCATGGACATGGCCACCATGGTCATGGACATGATCATCATGGCCACAGCCATGGATTTTCAGTTTCGACCCACCATGATGCAAAAGATGATCACCATCACACTCACGACGTTCACACTCACTATCATGATGAAAAGCATCCAAAAGATGCACCNGATCATTCTCATGAAGATCACATGCACCAGCATGTCCACAAAGAGGTTACTGAACCACTTCTTGGGGAAGCAAAAGGCGAATCCGAGAAGAAGAAGAAGCAGTGGAACATAAATGTACAGGGTGCTTATCTCCATGTACTTGGGGACTCTATCCAAAGTGTTGGGGTAATGATAGGGGGAGCAATTATATGGTACAACCCTAAATGGNAAATAGTTGATTTAATTTGCACTCTAATCTTTTCAGTGATTGTTTTGGGGACAACAATCAATATGCTGCGAAACATTTTGGAGGTCCTAATGGAGAGCACGCCGCGCGAGATAGATGCTACTCAGCTGGAAAGGGGGTTACTGGAGATGGAAGGAGTAGTGGCTGTTCATGAGCTGCACATATGGGCCATCACAGTTGGGAAGGTTTTGCTAGCTTGTCATGTTAAAATCAATCGCGACGCAGATGCAGACATGGTGCTGGACAAGGTTGTAGACTACATCAGAAGGGTTTATAACATCAGTCATGTAACTATACAGATAGAGCGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00072	85692	86933	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0008324 cation transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000072s00008113.1	PF01545.16	Cation_efflux	53	412	3.50E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.909
SRR1783600	control	17.892
SRR1783602	moderate drought stress	13.148
SRR1811619	moderate drought stress	13.287

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.716
DRR006520	Root Summer glycyrrhizin high producing strain	37.911
DRR006521	Root Winter glycyrrhizin high producing strain	20.941
DRR006522	Root Winter glycyrrhizin high producing strain	20.380
DRR006523	Root Summer glycyrrhizin low producing strain	38.018
DRR006524	Root Summer glycyrrhizin low producing strain	37.159
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.382
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.780

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.669
SRR2868004	Drought Stress (root)	59.143
SRR2967015	Control (root)	41.508

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.435
SRR9715740	Leaf	20.789
SRR9715741	Leaf	20.525
SRR9715739	Root	8.911
SRR9715742	Root	20.498
SRR9715743	Root	19.395

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.004
SRR8749028	MeJA induced 9h	56.684
SRR8749029	MeJA induced 9h	60.394
SRR8749030	Uninduced	71.926
SRR8749031	Uninduced	83.638
SRR8749032	Uninduced	58.848

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.047
SRR8400027	Control - Root	37.289