Gene detail information of Glyur000072s00008112 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01410.1 | 9.00E-39 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | KEH18566.1 | 1.85E-103 | late embryogenesis abundant protein [Medicago truncatula] |
| Swissprot | tr|Q9SJ52|YLS9_ARATH | 3.00E-15 | Protein YLS9 |
| trEMBL | tr|A0A072TMX2|A0A072TMX2_MEDTR | 7.00E-104 | Late embryogenesis abundant protein {ECO:0000313|EMBL:KEH18566.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00072 | 80556 | 81284 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000072s00008112.1 | PF03168.8 | LEA_2 | 115 | 215 | 9.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.606 |
| SRR1783600 | control | 1.384 |
| SRR1783602 | moderate drought stress | 1.343 |
| SRR1811619 | moderate drought stress | 1.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.486 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.833 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.153 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.148 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.576 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.689 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.038 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.780 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.503 |
| SRR2868004 | Drought Stress (root) | 4.118 |
| SRR2967015 | Control (root) | 4.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.084 |
| SRR9715740 | Leaf | 0.041 |
| SRR9715741 | Leaf | 0.308 |
| SRR9715739 | Root | 0.479 |
| SRR9715742 | Root | 0.931 |
| SRR9715743 | Root | 1.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.131 |
| SRR8400027 | Control - Root | 1.182 |