Gene detail

Gene detail information of Glyur000072s00008110.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24470.1	4.00E-62	pseudo-response regulator 5
NR	KHN06369.1	0	Two-component response regulator-like PRR95 [Glycine soja]
COG	YP_003207881.1	2.00E-12	response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator [Candidatus Methylomirabilis oxyfera]
Swissprot	tr\|Q689G6\|PRR95_ORYSJ	3.00E-85	Two-component response regulator-like PRR95
trEMBL	tr\|I1KHP3\|I1KHP3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G05530.2}

Sequence

Transcript Sequence

>Glyur000072s00008110.1
CACCAATAGCGAGCAACCTTTTGATCATTCAGGAGGAAGAAAGAGATAGGATTAGGGAGAGATTTTGAAGGGAAGATATTTTTAGCGATTTTCGCGGTTGTGGGCGAAATACGGTTAGAAACAGAGAGAGTGGTGAGTGAATCTGAATTGGAAAGGACGGTTTTGAAATCCTTTCTCATTTTTCTACTAAAATTCAGCAGATTTTTCTGATATTTTCCCCGTATTGTAAACTGAGGATGAGCTTGCTTGAAAATGGCTGAAGTGGTGGAGTTGAACGGGACTATGAAGGAGATAGAGGAAAAGGAACAAAAGAAGAATGATAATAATGATAATGGTGGCGATGGTGATGGTGATCACTGTAAGGAGGTGGTTAGGTGGGAGAGGTATCTGCCAAGGATGGTACTGACTGTGCTGCTCGTCGAAGCCNATCACTCTACTCGACAGATCATCACTGCAATACTCAAGAAATGCAGTTACAGAGTTATTGCGGTTTCTGATGGATTAAAGGCATGGGAGACGTTGAAGAAAAAGGCACCTGACCTAGATCTCATATTAACAGAAGTGGATTTGCCGGCAATATCTGGATTTGCACTTCTTTCTTTAATCATGGAGCATGACATTTGCAAAAACATTCCCGTTATAATGATGTCTTCTCAAGATTCAGTTAGCATCGTATTGAAATGCATGTTAAAAGGTGCAGCCGATTTTCTCATCAAACCTGTTCGGAGGAATGAGCTTACGAACTTGTGGCAGCATGTATGGAGAAGGCATGCTAGTAGCGGGGCCCTCCAAAATACAACATTTCCACAGGATAAACTTAAAACTGCCACAGAAGACAATTCTGCGAGCAATCAATCGGGTGATTTTGTGGCTTCCTCACAGAAAAATAACGAATGCAGTGAGAAATTGAGCGAGGCTCAAAAGAAACTACAAGTTTTGCCAACTCTTTNGCAGAGCACATGTGCATCGCCAATTTTGGAAGCTGAGAATGCATACAGTGAAAATATACAAAANGCTTCTCAGAACAACATTGATGTGGTGAAGCATGAAGAGATTGACAAATTCGAAAGGGAATCTACTAAGCATGATGATGAAAAAGGAGAGAAATCAATTACATTTGCATTAGAAGCTGCCGGGTGCAACAAAACTTTTAACTTTACAGATTTAAGGCTAGAACAAGAGCATGGTGCTGCTCAAACTGAACACAAAGATGAAATATTTAGAGCTGAGCTAAGGGGAGACGACTCTAATATTAATACCGAGATACATGGATGCAGTGATGAACTGATAGAACATTCTAGCGGAGCTATTGACTTGATTGCTACATTTGAGAATCTTCACAAGCATGCTAAGGAAAATTGTCTTGATGGTTGTAACGAAACCAAGTTTGATTTTGATACGCGGTTGGGGCTTTCTTTGAGAAGGGATTTTCCTGGCATCTCATGTAAACAAGCAAGTGAAGCAACTGAGGAATGGCATAGATTGAACCATTCTAATACTTCTGCCTTTTCTCGGTACAGTGGTAGTAAGTTGTTGCAGCCCCATTTACTCAACTCCAATTGGGATTCTAGTGAATCACATAAATCATCCGGAATTACTGCCAGTGATTGTTGTCATAATGGTGACTCCAATAAAACGGAGGAGGAGAATATGACTACTACAGTCGTTAGTCAGCATGGACAAGCTGGATCAAAATTATCAAATAGTGATACAAGCTCTGTGTTCCATGCAGAATCTGTTATTCATCACGTATGGACTCCTAAACCAGTTTGCCAAAAAGAGAGCTCTCCCTTTCCCTCAAGTACCTCATCTCATTCCAATCCTGAGAGTCACAATTCAGACCAACATCATCATCCCTGCTCTGATGAAGCTAACTATACCTGTCTTAATCAAAATTTGGATCATGCAAGGTATGATTCTCCTACTTCGGGTCAGATTGTTGATAATGACTCTTGCTATGCTTTAAATCATATTAATAGCAGAACGTATAGATGCATAGGCAATGGGAATGATGGAAATGCTACTTCAATTATGGTAGTTAAGGACAACCCGGAAAGTTTTAGTGATAGTGGGTGCTATAATTATGATGTATTTAGATTGATAGATTCTCATCGCTCCAGTCAAAGAGAAGCAGCTTTAACAAAGTTTCGACTGAAGCGGAAAGAGAGATGCTTTGAGAAGAAGGTTCGATATCAAAGCAGGAAAAGACTGGCAGAGCAGCGCCCTCGAGTGAAAGGGCAATTTGTACGCCAAGTAGACAATGATCATCCTGTTGCAGATGCTAGTGGTGACCCATGAAACTTGTTCTTCACAGCTTACTTTAGCACTGATTTGCATTAACAAAGATTAGATGTGCGATAAAGTGTGTATAGCGGAATCTGTTTTTTCTTGAAGTATTAGACAAGCTAGCATAGTGTTAAGCAGTTTGTGTTTTCTTCAGGTTTTCTTTGACTGATGCATATAAATTTAGTATTGTAAATATTTAGTGGGATTGCTCTAAACTCTAAAGTTTGATTTTAGCTGTTCATATATTTTCTTGGTTGAATACTAATGTGGCCAGGTAATTATGTTTCAGTTTGAAAATATCCAGTTAAGCACATCTGGTTTCGTTATCTTGAACATTGTTTAAAACTCAGTTAACATGCAGATGCCTCGTCTCTCGTTCAAATTTGAGACCTGATCATGTGAAAAGTATGTCTACACAATTTTCACACGATAAAATTGTGTGAAATTTTAACGTGAAAATATCCATAATTCCTAGTTCACATATTACCCCGATCTCATATTTATCCCATAGATTGCGAAGTTATTGACACTGATATTTTGTTTCCTCGATATATAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00072	73084	78249	+

Gene family

Gene family	subfamily
Transcription Factors Family	Pseudo ARR-B
EAR motif-containing Proteins	Pseudo ARR-B

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000160 phosphorelay signal transduction system

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000072s00008110.1	PF00072.19	Response_reg	53	164	2.30E-19
Glyur000072s00008110.1	PF06203.9	CCT	625	668	4.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.809
SRR1783600	control	16.767
SRR1783602	moderate drought stress	21.730
SRR1811619	moderate drought stress	21.660

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.491
DRR006520	Root Summer glycyrrhizin high producing strain	16.360
DRR006521	Root Winter glycyrrhizin high producing strain	21.340
DRR006522	Root Winter glycyrrhizin high producing strain	20.838
DRR006523	Root Summer glycyrrhizin low producing strain	14.134
DRR006524	Root Summer glycyrrhizin low producing strain	14.114
DRR006525	Leaf Summer glycyrrhizin high producing strain	55.592
DRR006526	Leaf Summer glycyrrhizin high producing strain	55.147

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.134
SRR2868004	Drought Stress (root)	19.076
SRR2967015	Control (root)	17.449

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.029
SRR9715740	Leaf	53.192
SRR9715741	Leaf	32.897
SRR9715739	Root	2.575
SRR9715742	Root	10.202
SRR9715743	Root	8.672

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.386
SRR8749028	MeJA induced 9h	35.346
SRR8749029	MeJA induced 9h	18.026
SRR8749030	Uninduced	8.997
SRR8749031	Uninduced	11.629
SRR8749032	Uninduced	11.584

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.584
SRR8400027	Control - Root	10.931