Gene detail

Gene detail information of Glyur000072s00008109

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01080.1	3.00E-54	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	AFK45924.1	4.39E-96	unknown [Lotus japonicus]
COG	YP_003798940.1	3.00E-11	putative RNA-binding protein RbpA [Candidatus Nitrospira defluvii]
Swissprot	tr\|P19683\|ROC4_NICSY	1.00E-22	31 kDa ribonucleoprotein, chloroplastic (Precursor)
trEMBL	tr\|I3T082\|I3T082_LOTJA	2.00E-96	Uncharacterized protein {ECO:0000313\|EMBL:AFK45924.1}

Sequence

Transcript Sequence

>Glyur000072s00008109.1
ATGGCAAAATTCCCATCTACAATATATATATCTATCCGTTTATCCGGCTCAACTGAATCGGGTCTACTTGACTCACTGAGTCTCTCGTTCTGTGTTCGAGAGAAAACACGAATGGCATTGCCTCTGCTACCTTGTTCTTCTTCCTCTTCGGTGCTGAGCTGGAAACACAAACCCCAATTCCCAGCTTCCTCTAAACGATTCGTTTCGCATTTCGGGAATCCCTGCTTGGTACCCGCACCTGCACCTGCACCTGCACCTGCACCTGCACAACCTTCTTCTTACTCTCTGCTACTAAGGAAAGCCAGGCTTTGTGCGGTGGCAGAAGGGATTAACGGAGAAGAATCTCTGGACTCACAAAACGATGACGTTTTCGGGGAGGAGGAAGTAGAACGGCAGAAGAAGCTGAGAACACCGTGTGAAGTGTACGTGTGCAATCTCCCCAGAAGCTGTGACGCGGCACATCTACTTGATATGTTCAAGCCTCACGGAACCATCCTATCTGTTGAGGTTTGCCGGAATGCTGACACTGGTGAAAGTAAGGGGTGTGGTTATGTCACAATGGGATCTATAAACTCAGCAAAACAGGCAATTGCTGCATTGGATAGATCAGATGTTGGGGGGCGCGAAATGCGGGTTAAGTTTTCGGTTGAGATGAATGCTGGAAGGAGAAATGCTGAGAAATTGAATTCTTCCCCCATGAGAGTTATATACTATGAAGCTCCTCATAAGTTGTATGTGGGCAATCTTCCCAGGGATGTTAAACTTGAACAGCTGAGAAGACTTTTTAGCAGGTTTGGGAATGTGGTTAGTGCAAGAATGATGCATGATCATAAACAAGCAAAAAGCCGAGAATTTTATGGTCGTACACTAGTAGTTAGAGAGGGAGTGGAGAGGACCGAGCCTTAACAAAAGCTTCAGTGTCTGCAAAAAAGATGGAAGCAGCATTTTTGGTTTTCTACATGGAGGAAGATTTGTAGTGTGCTTTGCTGGGACAGATTTGTGGAGGCTTCCTGTGAACTAGAAAATGTTAGTGCAGAGAAGAGGTGACCTTGTTGATGGAAAATTTAACTAACATATAGATCAATTATCATGTCGATACATATCANAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00072	70025	72327	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000072s00008109.1	PF00076.17	RRM_1	141	211	3.20E-16
Glyur000072s00008109.1	PF00076.17	RRM_1	244	285	4.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.870
SRR1783600	control	5.641
SRR1783602	moderate drought stress	4.931
SRR1811619	moderate drought stress	5.147

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.006
DRR006520	Root Summer glycyrrhizin high producing strain	2.926
DRR006521	Root Winter glycyrrhizin high producing strain	6.810
DRR006522	Root Winter glycyrrhizin high producing strain	6.699
DRR006523	Root Summer glycyrrhizin low producing strain	2.351
DRR006524	Root Summer glycyrrhizin low producing strain	2.382
DRR006525	Leaf Summer glycyrrhizin high producing strain	49.118
DRR006526	Leaf Summer glycyrrhizin high producing strain	49.297

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.647
SRR2868004	Drought Stress (root)	6.953
SRR2967015	Control (root)	6.625

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.201
SRR9715740	Leaf	74.838
SRR9715741	Leaf	44.101
SRR9715739	Root	2.469
SRR9715742	Root	3.716
SRR9715743	Root	2.670

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.154
SRR8749028	MeJA induced 9h	8.482
SRR8749029	MeJA induced 9h	5.596
SRR8749030	Uninduced	5.140
SRR8749031	Uninduced	2.305
SRR8749032	Uninduced	2.270

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.684
SRR8400027	Control - Root	4.131