Gene detail

Gene detail information of Glyur000072s00008105

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G32900.1	0	UDP-Glycosyltransferase superfamily protein
NR	XP_004514923.1	0	PREDICTED: granule-bound starch synthase 1, chloroplastic/amyloplastic-like [Cicer arietinum]
COG	YP_005367199.1	3.00E-93	glycogen synthase [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q00775\|SSG1_SOLTU	0	Granule-bound starch synthase 1, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|B2CP02\|B2CP02_LOTJA	0	Starch synthase, chloroplastic/amyloplastic {ECO:0000256\|RuleBase:RU361232}

Sequence

Transcript Sequence

>Glyur000072s00008105.1
TAAAAATGCTGCAGCCTCCTGCGCACCACCGTTTAGAAGCAGCACAATAACTAGCTCCATCTCTCTCGGTCTCTCTAGAGTATCAAAAAATGGCAACAGTGACTGCTTCAAGTAACTTAATATCCAGAAGTTCTCATGTCTCGTATGAGTCTAAAGCGGCAGCACCAATGGGACTTCGTTCTTGTTCTCTAAGGCAGACCAATACTCATAATGGGTTGAGAATTTTGAACCCGGTGGATGAGCTACTAAATAGAACCCCAATTAAAGTTAAGGCAGTGCAAGCTAGGAGGAAGGGTCTTCAGGGAAAGAATAATTTCAGGCCTACAGGTATCATAATTTGTGGCATGAATTTGATCTTTGTAGGAACGGAGGTTGCTCCTTGGAGCAAAACTGGTGGCTTAGGAGATGTTCTAGGAGGTCTGCCACCAGCATTAGCAGCTAATGGGCACCGAGTTATGACCATTGTTCCACGTTATGATCAGTACAAAGATGCATGGGATACAAGTGTAACAATTGAGGTGAAAGTAGGAGATAAAACAGAAAAAGTTCGCTTCTTCCATTGCTATAAAAGAGGAGTTGATCGTGTCTTTATAGATCACCCTATATTTCTTGAAAAGGTCTGGGGGAAAACTGGAACGAAACTTTATGGACCTGCTGCAGGAGATGATTACCAAGACAATCAACTACGTTTTAGCCTGTTCTGTCAGGCAGCGCTGGAAGCACCAAGGGTTCTGAATCTTAAGTGTAATAAATACTTCTCTGGACCATATGGTGAAGATGTCATTTTCATCGCTAATGATTGGCACACTGCGCTTCTCCCTTGTTACTTGAAATCTATGTACCAGTCAATTGGCATCTTTAAGAATGCCCGAGTTGTTTTTTGTATCCACAACATCGCTTACCAAGGNAGATTTGCATTCGCAGACTTTTCACTTCTCAATCTCCCTGACCAATTTAAAAGTTCCTTTGACTTCATTGATGGGCATGTTAAACCAGTTATTGGAAGGAAAATCAACTGGATGAAAGCTGGAATTTTAGAATCACACCTGGTTTTAACTGTTAGTCCATACTATGCTCAAGAACTAGTGTCGGGCCCAGATAAAGGAGTGGAGTTGGACAACATCCTTCGCCGAACTGGTATCGTTGGAATTGTGAATGGCATGGATGTTCAGGAATGGAATCCATCCACTGACAAATATATAACTGTCAAATATGATGCTTCAACAGTATTGGAAGGAAAGGCTCTTCTGAAAGAAGCCCTCCAAGCAGAAGTTGGATTGCCAGTTGACAGAAATATTCCCCTCATTGGTTTCATTGGTAGGCTTGAAGAGCAAAAAGGTTCTGATATTCTTGTAGCAGCCATTCCCCAATTTGTTGGGGAGAATGTTCAGATTGTAGCCCTAGGAACAGGAAAAAAAGAAATGGAAAAGCAGCTTCAGCAACTTGAAATATCATACCCTGACAAGGCCAGAGGAGTTGCAAAATTCAATGTTCCCCTAGCCCACATGATAATTGCTGGAGCTGATTTTATATTGATTCCTAGCAGATTTGAGCCTTGTGGTCTCATTCAGTTACAAGCTATGCGCTATGGAACTGTACCTATTGTTGCCTCAACAGGTGGATTAGTCGACACGGTCGAAGAAGGTTTCACTGGATTTCAGATGGGTTCCTTCAATGTTGAATGTGATGCTGTGGATCCTGTGGATGTGGATGCTCTAGCAAAGAGTGTCAAAAGGGCCCTTGCAGTTTATGGAACTCTAGCTTTTACAGAAATGATGAAGAATTGCATGGCTCAAGATCTCTCATGGAAGGGACCTGCTAAGAAGTGGGAGGAAGTGCTGCTAAGCTTGGGAGTTCCTGGTAGTGAACCTGGAATTGATGGAGAAGAAATTGCNCCACAGGCAAAGGAAAACGTGGCAGCTCCATGATGAGAACAAAGATGTGAGGGAAGCTTCTGCTAGTCTCAGCCTCATGAAGTTCGCAGCCCCTTGTGCTTCTAAATTATATGTCTTCATCCTAATTGCATTTTTTGTCTGCTTTAAAATAAATGATAGAAATTTATATAGAAATGGAGATTATACAATTCGAATCAAAAGAGGGTAATCGGTAATCCATCCCAGTGAAGGAGTGCTCATCATCTACACCCAAATGGCGTATGTATAAGTGCATGTTTTCAAGATTAGCATGAAGTGTTTCTTGGAACTTTATGCTGGGAGAAACAAGGAGTTTAAACTTGTGTATCTAACTTGGACAGATTAATTTTTCTTCTGCCTTAGAATTGTAATTATCGTTCATTATTGTATTCCTACCTTCAAAATTATTGTGTGTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00072	45219	49658	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13679	WAXY	EC:2.4.1.242	Starch and sucrose metabolism	map00500
			Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009250 glucan biosynthetic process

molecular_function
GO:0009011 starch synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000072s00008105.1	PF08323.6	Glyco_transf_5	88	347	2.80E-75
Glyur000072s00008105.1	PF00534.15	Glycos_transf_1	404	524	5.30E-17
Glyur000072s00008105.2	PF08323.6	Glyco_transf_5	88	267	1.90E-47
Glyur000072s00008105.2	PF08323.6	Glyco_transf_5	306	392	3.60E-20
Glyur000072s00008105.2	PF00534.15	Glycos_transf_1	449	569	5.70E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.014
SRR1783600	control	0.030
SRR1783602	moderate drought stress	0.091
SRR1811619	moderate drought stress	0.091

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.087
DRR006520	Root Summer glycyrrhizin high producing strain	0.085
DRR006521	Root Winter glycyrrhizin high producing strain	0.045
DRR006522	Root Winter glycyrrhizin high producing strain	0.041
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	58.022
DRR006526	Leaf Summer glycyrrhizin high producing strain	57.464

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.917
SRR2868004	Drought Stress (root)	2.703
SRR2967015	Control (root)	0.203

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	91.315
SRR9715740	Leaf	93.416
SRR9715741	Leaf	69.789
SRR9715739	Root	0.160
SRR9715742	Root	0.236
SRR9715743	Root	0.509

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.524
SRR8400027	Control - Root	2.063