Gene detail

Gene detail information of Glyur000071s00005289

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20560.1	1.00E-116	DNAJ heat shock family protein
NR	XP_004485834.1	0	PREDICTED: dnaJ homolog subfamily B member 4-like [Cicer arietinum]
COG	YP_003690643.1	5.00E-34	chaperone DnaJ domain protein [Desulfurivibrio alkaliphilus AHT2]
Swissprot	tr\|Q04960\|DNJH_CUCSA	1.00E-39	DnaJ protein homolog (Precursor)
trEMBL	tr\|V7BQ51\|V7BQ51_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW20114.1}

Sequence

Transcript Sequence

>Glyur000071s00005289.1
ATTTGGTGGATATTTATTTCTTAAAGAAATAGATACCGTTCAAGATTTGATGAAATAATAATCAAATTCTATTATACTATTTCTCTTTATTGAGATATCAGATTATATCAGATTACCNTTGTGTTCAATTCAATCAATATTTACAATCCAGCAACAGGACAAAACTGAAAGCATAAGGGTAATAACAACAACAGACTCACTCCAAAGTCTAAATTTTCAATTGGAGGTGTAGTGGTAGAATAAGAAGGAGGAAGATGGGGTTGGACTACTATGAGATTCTGGAGGTTGACAGGAATGCAAAAGATGAAGAGTTGAAGAGAGCTTACAGAAAGCTTGCCATGAAATGGCACCCTGATAAGAACCCAAACAACAACAAAGAGGAGGCTGAGACTAAATTCAAACTCATCTCTGAAGCATATGAGGTTCTAAGTGATACCCAGAAGAGAGCAATTTATGATCGGTATGGAGAAGGTAGCCTTAAAGGTGGAATGCCACAACCAGATGCTGGTGTAGCTTCATTCTTCCAAACTGGGGATGGCACAACAACGTTCAGGTTCAATCCCAGGAATGCAAACAGCATTTTTGAAGAAGTTTTTGGCTATTCAAGACCACATGGAGGAATGGGAATGGGGTTTGGTGGAGGCAGCTGTAGAGGCATGAGAGGTGGGTCATGGGTGTCAAGGTCCTTCGGTGGAATGTTCGGCAGAGACATGTTTGGAGAGGGAAGACCCATGAGTCAAGGTCCGCGACGAAAGGCACCTCCCATTGAGAATAGGTTACCTTGCAGCCTTGAGGAACTCTACAAGGGGACTACAAAAAAGATGAAGATTTCAAGGGAAATTGTACATGCAAGCGGTAAAACATTGCATGTGGAGGAAATACTAACCATTGAAGTCCAACCAGGGTGGAAAAAGGGAACAAAAATCACATTCCCAGAGAAAGGAAATGAGCAGCCAAATATTATTGCTGCAGATCTTGTGTTTATTATTGTTGAGAAACCTCACAGTGTATTTACAAGAGATGGTAATGATCTGGTTGTGACAAAGAAGATATCACTCTCAGAAGGTGAAGCTCAAACGGGCTACACCTTCCAACTTACAACTCTAGATGGCAGGGGTCTGACGATTGCCACAAACAATGTAATAATGGATCCAAACTATGAAGAAGTGATCACTGGGGAAGGTATGCCAATTTCCAAAGATCCTTCAAAGAGGGGTAATCTTAGGGTCAAATTCAACATCACATTCCCAAGCATGGTTGACGCTGAAGCAGAAAGCCAGAATTAAGAAATGTATTGCACCTTAAATAGAGTGGCAACCACTGCCAAATGTTTATCTTGTGTATAGCATAGTCTTCCATCTTGCTCCCTTTCCTACCTTTCTTGTTTCTCCATTTTATAGAGCTTTGATCTATGTAGTTCGTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00071	349075	351718	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

molecular_function
GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000071s00005289.1	PF00226.26	DnaJ	4	68	4.30E-28
Glyur000071s00005289.1	PF01556.13	CTDII	259	337	1.70E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.611
SRR1783600	control	30.858
SRR1783602	moderate drought stress	25.919
SRR1811619	moderate drought stress	25.781

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.984
DRR006520	Root Summer glycyrrhizin high producing strain	42.659
DRR006521	Root Winter glycyrrhizin high producing strain	13.842
DRR006522	Root Winter glycyrrhizin high producing strain	13.480
DRR006523	Root Summer glycyrrhizin low producing strain	17.074
DRR006524	Root Summer glycyrrhizin low producing strain	17.417
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.192
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.385

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.389
SRR2868004	Drought Stress (root)	32.353
SRR2967015	Control (root)	32.141

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.293
SRR9715740	Leaf	18.055
SRR9715741	Leaf	17.064
SRR9715739	Root	6.393
SRR9715742	Root	22.108
SRR9715743	Root	17.257

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.021
SRR8749028	MeJA induced 9h	3.933
SRR8749029	MeJA induced 9h	2.340
SRR8749030	Uninduced	5.699
SRR8749031	Uninduced	3.411
SRR8749032	Uninduced	2.176

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.816
SRR8400027	Control - Root	49.311