Gene detail

Gene detail information of Glyur000071s00005288

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G28420.1	homeobox-1
NR	XP_003541723.1	PREDICTED: uncharacterized protein LOC100777465 isoform X1 [Glycine max]
trEMBL	tr\|I1M1Z5\|I1M1Z5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G30860.1}

Sequence

Transcript Sequence

>Glyur000071s00005288.1
ACTTTTTAAAGAACCAATCCAATGCACACCTTGAACAAAAACACGTTCAGTAATTCTTCTCTCTCTCTCCAATTCCATTACGCACTCAACCAATTGACCAAAATTACACATTGAAAAGACGAAAAAAGATAAACAAAAGAAAAATCAAACCTCGCAATAAAAAGTTCATCCAAATTAAAACAACGTGGAGAGGAAAATAGATGCACAAGACACACACAGAGTCAGCACGTCAGAGGAACATTTCATCATTTTAGTTAATAAAATAAAAATAAAAGTTTAGAAACATAAACAAAGAGAAAAAAGGGCATTAATCTTCTTTCTTTGGATTTGGTTTTGGTTTTGTTTTTTAGCTGGCCCTCCCGTTTGACACGAGCATCAAACGATCATCACACCGTTCGTTCATAAAAACGAAAAAAATAAGAACAAAAACAGATAAACATTATTACTGCAACAATTATTTTTAATTTTTGAATTTGAAAAGGGAAATTATTATGAAAGGTGGTGGTGGAGTTATAGTAGTCAAGAGCAACTGTTGTTGTTGGATTATTATTTTTGTTTATCGATTATTACTACTACTCTTATTATTATTTTTGCATTGGTTTTTGTTCTTCGTTGTTCTTTCTTTTCAATCCCATATTACACGCTGCTTTTCTATTCTTTTGAATTTAAATTTCCCCCATTGATAATTGTTATCTTATTTTATTTTTTTCATCACCCAGAGGATAATAATCCTATGCCTTTCCATTTCTTGACTATGACGGAATTTTTGGTTCTGAAGAGATAGAAAGAGGAGATAAACACAAATACTAAAAAAACAATAAAGTTAAAATAGAAATTGTTACCTTTCGGTTGCCCTAATTTTTTCGTGCTTGCTTTGTTTCTGTTTTTCTGCGTCTCCTCGTTCTTCTTTTGTGAGTTGGTGGATTCNTAGGGTTTGAAGATCTCGATCGATGGAGGGCGAGGCTGCTTCGGAGGCAGAGAACAATACCGTGAAGAGAGAAGATTTGGGTGATAACAGCAATGACAACAACAATAACAACAACAATGGAAGCAACAACAGCAAAATTGTGAATTCCAGTGATGGTCAGAGCAAACCAAAGCGCCAGATGAAGACCCCTTTTCAGCTTGAAACGCTTGAGAAAGCTTATGCTTTGGAGACGTACCCATCGGAGGCTATGAGGGTGGAGCTGTCGGAGAAGTTGGGGTTGTCGGATCGGCAGTTGCAGATGTGGTTCTGTCACCGGCGGTTGAAGGACAAGAAGGAGTTGCCGGCTAAGAAGCCGCGGAAGGCGCCACCTTTACCGGATTCTCCCACTGATGAGCCGAGGTTGGGCCCTGAGCTCGGCAATGAGTATGGATCCGGGTCGGGTTCTGGCTCCAGCCCGTTTGCCCGGTCGGAGTTGCAGAATGCGGTGCCCCGGGCCGTGCCAGGGTACTATGAGTCTCCACAGGCTATAATGGAGCTTAGAGCAATTGCTTGTGTGGAGGCACAGTTAGGGGAGCCTTTGAGGGAAGATGGACCCATTTTAGGAATAGAGTTTGATCCATTGCCACCGGATGCATTTGGGGCACCCTTAGCCGTTACAGAACAGCAGAAGCGGCCTAGTCTTGCCTATGACAGTAAAATATATGAAAGACACGATGTTAGGACGAATAAGGCAGTGGCAAGGACATTCCCTGAATATTCATTTCTTCCGATCCAGTCCAGCATTAGATCTGATGCTTTTGGACAATTAAGCCAACCTCATTTGTATGATCCAATGGAGGGTCCTACCAGAACTCCTCCTTTTCCCGTTGGAAATGAACATCTGCCCAGAATTCATGCTACCCAAAGTCATTCTTCTCGTGTTCGCCTTTTGTCTCAACAGGACAAGCAAGGGATTCCCTACCCATCTCCTCCTCGAGATAATGATGTTGTCCCCAAAAGGGAGCCTCACACAAACATAGCCAATACTGGAATGAACACCCACTTCACTGATCACCCAATTGTTGGACAAGAAAATCCTTATACCTTACCCGGTGGACAAGTGTCCCATGATGATGGAGTATTGCGGATGGAGAGGAAACGAAAGAGTGATGATGCCAGAGCTGCAAAGGAAGCTGAAGCCTATGAAATGAGGATGAGGAAAGAGCTTGAGAAACAAGATAACCTCAGAAAAAAGAGTGAAGAGCGGCTAAGGAAAGAAATGGAAAGACAAGATCGTGAGAGAAGGAAGGAAGAAGAGAGGCTGATGCGTGAGAGGCAGCGTGAAGAGGAAAGATCAAAGCGTGAGCAAAGACGGGAGATCGAACGAAGGGAAAAGTTTTTGATGAAAGAACATCTAAGAGCTGAGAAAAGGAGGCAAAAAGAAGAGCTTCGCAAAGAGAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAAAAGGCAAATGCTCGAAGAATAGCTAAAGAATCTATGGAGCTCATTGAGGACGAACAACTGGAATTGATGGAATTGGCTGCAGCAAGCAAGGGGCTTTCCTCTATTATCCATATCGATCAGGATACTTTGCAAAACCTTGACTCATTTAGGGATTCCTTGTGTGATTTCCCGCCCAAGAGTGTAAAGCTAAGAAAGCCATTTGCTATCCAACCCTGGATGAACTCAGAACAAAATGTTGGCAACCTTCTCATGGTTTGGAGATTCTTGATTACTTTTGCTGATGTTCTTGAGTTATGGCCTTTTACTCTTGATGAATTTGTACAAGCATTTCATGATTATGATTCAAGATTGTTGAGTGAGATACACATTGCTATTCTTAAAGTGATAATAAAAGATATCGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGAGTGAACCAGAATGGAGCTGCTAATCCTGCAGGTGGCCATCCAGAAATTGTAGAAGGAGCATATGCATGGGGCTTTGACATACGAAATTGGCAGAAGAACTTAAATCAATTGACATGGCCGGAAATTTTGCGACAGTTAGCGCTGTCTGCAGGATTTGGACCGCAGCTGATAAAAAGAAGCATTACGTGGTCATATGCAAATGATAAAGAGGAGGGAAGAAGTTGTGAAGATGTCATTTCTACACTTCGAAATGGTTCAGCAGCTGAAAGTGCAGTGGCAAAAATGCATGAGAAAGGTCTATTAGCTCCTCGAAGATCGAGGCACCGGTTAACTCCTGGTACAGTTAAATTTGCAGCATTTCATGTTCTCTCTTTGGAGGGTGGCAAGGGTTTGACAGTACTGGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACGACCAGCAAGACACCTGAAGCATCGATTTCTGTTGCTTTGACAAGAGATACTAAACTTTTTGAAAGAATAGCTCCATCAACATATCGTGTACGAGCTGCATTTAGAAAGGATCCTGCTGATGCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGCGAAGATGCTGATGATGTTGAAAGGGAAGATGAATCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGATGATGAATTAGTAAATCCTTCAAGTGCAACCCTAAATTCAGAACAGTATGATGACACAAACATTTGCTCAGCAAATGTAAAGGAAAATTTAGTTCATGATGTAGACCTTATTCAAAATGAGTTTGATACAGATCTGCCTTGTTTTCCTGAGAATGGTTCCAAGGATGCTGATTGTCCCAGTTCTGTCACTGGNCAACCCGTTGCTTGTGAAGATTTAAATACTAGAAATCTCCTTGAAGATAATATGGAAATTGATGAAAGCAAGTCTGGAGAATCCTGGGTTCAAGGGCTTACTGAAGGAGAATATTCTGATCTCAGTGTAGAAGAGCGTCTAAATGCTCTTGTTGCATTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTATTATTCTTGAGGATCGAATGGAAGCAGCAAATGTTCTGAAGAAGCAAATGTGGGCAGAAGCACAGATAGATAAAGTTCGTCTAAAAGATGATATTATTAGTAAGTCAGATTTCCCAACACTAATTGGAAATAAAGTCGAAACACAATACACTTATCCTGCTGTGGAGGGCAACCAAAGCCCATTGCTTGACATCAATATTAACAATGTTAATAATGAAGCATCACCCAGCACTGCAGAAAACCAAAAAGTAGCTCCTGTTGCACAGAGCCTGCCTATTGACAAGCCCCCGATAGTTCAAGATTTCTGCACAGGCACAGGTCCTGACAACTTTCAGACTCAGATACCTGCACAATACTCAAAAAGGGCACGATCACAGTTGAAAGCTTATATTGCCCACATAGCAGAGGAGATGTATGTCTACAGATCTTTACCCCTTGGCCAAGACCGCAGGCGCAATCGATATTGGCAATTTGTTGCATCTGCTTCTAGCAATGATCCTGGTTCTGGCAGGATCTTTGTTGAACATCATGATGGCAGTTGGAGGCTTATTGATTCTGAAGAGGCATTTGATGTTCTTTTGACATCACTGGATTCACGTGGGATTAGAGAATCTCATTTGCGCTTAATGTTACAAAAGATTGAGAAATCCTTTAAAGAAAATGTTCAAAAGAATGCAAAAATTGGAGGCTGTAATGAAGTTTCTGTTAAAATTGAAGCTAATGAATCATATCCAATCCCTCAGCGTCATGCTGGATCTGACAGTCCTAGCAGCACCCTTCATGACTTGAACTCTGATACATCAGAAACTTCATCGTCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGAGAAGAAAGCTGCCTTGAGAAGGTATCATGATTTTCAGAAGTGGATGTGGAAAGAATGCTATAATTCATCAATTTTATGTGCAATGAAATATGGGATAAAGAGATGCAAACCACAGGTGGACATTTGTGATATGTGTTTCAATCCTTATTTTGTTGAAGACTCCCATTGCAATTCCTGCCACCGGACATTTCCCTCAGATAATGGATTCAATTTTTCTAAACATGCATTTCAATGTGGAGGCAAGTTATCCAAAGATATTTGCATTTTGGAATATTCTCTTCCCCTGCGGACAAGATTGCTTAAGGTCCTATTGTCTTGTGTGGAGGCATCTGTTCTTTCTGAAGCATTTGGAACAAATTGGACAGCTGATGTTAGGAAGCATTGGGGTGTGAAGTTGAGTAAATCATCATCTGTTGAGGAACTTTTACAGATATTGACCGTATTTGAAAGAGCACTACGGCGAGATTTTTTGTCATCAAATTTCTCTACAACAGACGAATTGTTGGGATCAAGCAGTATGTCAGAAGTTGTTGCACGTTCNTCTACTGATCCTGAATCAGTTGCTGTACTTCCATGGGTTCCACAAACCACTGCAGCTTTGTCTCTCAGGCTTTTTGAGTTTGATTCATCCATCAGCTACGTAAAGCTTGAGAGAGTTGAGCCTTGTGAGGAGAAAGAAGCCGGAGAATACATTAAGCTTCCATCAAGATATGCTCCTTTCAAATCTAATAGGGAGGTTGAACCAGCAGAATATGACCATAATGAATTCAATAGAGATAAATCTGCTGCTAATAAAATTGCGCGANGTGGCAATAAACGTGGACGAGGCAGCAATGATCAAGGACGGGGTAAAAAACTGTCTAAAAGAATGCGCAATTCCAAACGAGATACTGGCCGCCGAAATGTCAAGGTCCCTATGAATCTAAGTCAGAAATTGAAACAGCAGGGGCGAGGAACTCAAGTACAAGGTGGTGGACGAGGTCGCCGAACGGTCAGAAAACGGAGAGTAGAAAAAAGAGCTGTTGAAGATTTGTTGCTGGGCCATGCTGCAGCAGCCAGTCGTAGCTCCAAGTGTGGTAAAGAACCATTGAGAAGCTTGGATGAAGAATGGGATGGAGAAAGGGCAAGTCCCATGACTCCTGTTCACATTGGGATTGCTGACATTAGTAACAGTGTTGAAGAGGTGGAATCTGATGATAATGGTCAAGCAGTGGAATATGATCAAGGAAACTGGGAGATAGGTTATAATGGTGTCTCCCCTAACAGATGGAGTAGGGGTTTGGGTGGAATGAGTGATGATGATGTGGATGCTTTTGAAGATGACAATGATAATGATAATGGCATTGAAGAGAATGAAGTGGAGGATTCTGAGGCAGATGCCATGAGTGGGGGTTCAGATGACATGGCAAATAGGGTAGTGGATGTAGGAGGCTCAGACTCGGCTGTCTCTGAAGATTCTTCTGATTCGAACATCCATTTTTAATTTGATCAATGAAGGGATTTTCATCCCAAGGCTGCATTACATTTTTTATATTGCAGCTTTACAGATACACCTGAGCTCCAGGTCATGCATGTCACGGCTGGAAGAGTTTATGGTTGAGTAGATTTAGTGTATATTATCCATGCTAAATGGATCCTTGTATTCTTAAGCTTCTTTAAGCAGAGGGC

Protein Sequence

>Glyur000071s00005288.1
MEGEAASEAENNTVKREDLGDNSNDNNNNNNNGSNNSKIVNSSDGQSKPKRQMKTPFQLETLEKAYALETYPSEAMRVELSEKLGLSDRQLQMWFCHRRLKDKKELPAKKPRKAPPLPDSPTDEPRLGPELGNEYGSGSGSGSSPFARSELQNAVPRAVPGYYESPQAIMELRAIACVEAQLGEPLREDGPILGIEFDPLPPDAFGAPLAVTEQQKRPSLAYDSKIYERHDVRTNKAVARTFPEYSFLPIQSSIRSDAFGQLSQPHLYDPMEGPTRTPPFPVGNEHLPRIHATQSHSSRVRLLSQQDKQGIPYPSPPRDNDVVPKREPHTNIANTGMNTHFTDHPIVGQENPYTLPGGQVSHDDGVLRMERKRKSDDARAAKEAEAYEMRMRKELEKQDNLRKKSEERLRKEMERQDRERRKEEERLMRERQREEERSKREQRREIERREKFLMKEHLRAEKRRQKEELRKEKEAERRKAALEKANARRIAKESMELIEDEQLELMELAAASKGLSSIIHIDQDTLQNLDSFRDSLCDFPPKSVKLRKPFAIQPWMNSEQNVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLSEIHIAILKVIIKDIEDVARTPSTGLGVNQNGAANPAGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEILRQLALSAGFGPQLIKRSITWSYANDKEEGRSCEDVISTLRNGSAAESAVAKMHEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGGKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDTKLFERIAPSTYRVRAAFRKDPADAESILSEARKKIQIFENGFLAGEDADDVEREDESESDEVDEDPEDDELVNPSSATLNSEQYDDTNICSANVKENLVHDVDLIQNEFDTDLPCFPENGSKDADCPSSVTGQPVACEDLNTRNLLEDNMEIDESKSGESWVQGLTEGEYSDLSVEERLNALVALVGVANEGNSIRIILEDRMEAANVLKKQMWAEAQIDKVRLKDDIISKSDFPTLIGNKVETQYTYPAVEGNQSPLLDININNVNNEASPSTAENQKVAPVAQSLPIDKPPIVQDFCTGTGPDNFQTQIPAQYSKRARSQLKAYIAHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEHHDGSWRLIDSEEAFDVLLTSLDSRGIRESHLRLMLQKIEKSFKENVQKNAKIGGCNEVSVKIEANESYPIPQRHAGSDSPSSTLHDLNSDTSETSSSFKIELGKSESEKKAALRRYHDFQKWMWKECYNSSILCAMKYGIKRCKPQVDICDMCFNPYFVEDSHCNSCHRTFPSDNGFNFSKHAFQCGGKLSKDICILEYSLPLRTRLLKVLLSCVEASVLSEAFGTNWTADVRKHWGVKLSKSSSVEELLQILTVFERALRRDFLSSNFSTTDELLGSSSMSEVVARSSTDPESVAVLPWVPQTTAALSLRLFEFDSSISYVKLERVEPCEEKEAGEYIKLPSRYAPFKSNREVEPAEYDHNEFNRDKSAANKIARXGNKRGRGSNDQGRGKKLSKRMRNSKRDTGRRNVKVPMNLSQKLKQQGRGTQVQGGGRGRRTVRKRRVEKRAVEDLLLGHAAAASRSSKCGKEPLRSLDEEWDGERASPMTPVHIGIADISNSVEEVESDDNGQAVEYDQGNWEIGYNGVSPNRWSRGLGGMSDDDVDAFEDDNDNDNGIEENEVEDSEADAMSGGSDDMANRVVDVGGSDSAVSEDSSDSNIHF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00071	337334	348161	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB
EAR motif-containing Proteins	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000071s00005288.1	PF00046.24	Homeobox	49	104	6.00E-16
Glyur000071s00005288.1	PF02791.12	DDT	560	618	7.50E-25
Glyur000071s00005288.1	PF05066.8	HARE-HTH	741	809	1.30E-12
Glyur000071s00005288.1	PF15612.1	WHIM1	953	998	9.40E-05
Glyur000071s00005288.1	PF15613.1	WHIM2	1132	1169	3.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.307
SRR1783600	control	23.333
SRR1783602	moderate drought stress	30.133
SRR1811619	moderate drought stress	30.001

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.819
DRR006520	Root Summer glycyrrhizin high producing strain	20.665
DRR006521	Root Winter glycyrrhizin high producing strain	16.304
DRR006522	Root Winter glycyrrhizin high producing strain	15.859
DRR006523	Root Summer glycyrrhizin low producing strain	16.349
DRR006524	Root Summer glycyrrhizin low producing strain	16.479
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.090
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.208

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.689
SRR2868004	Drought Stress (root)	51.971
SRR2967015	Control (root)	57.921

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.218
SRR9715740	Leaf	23.624
SRR9715741	Leaf	30.770
SRR9715739	Root	2.423
SRR9715742	Root	29.286
SRR9715743	Root	24.463

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.734
SRR8749028	MeJA induced 9h	49.108
SRR8749029	MeJA induced 9h	14.627
SRR8749030	Uninduced	103.686
SRR8749031	Uninduced	68.136
SRR8749032	Uninduced	40.273

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	49.762
SRR8400027	Control - Root	44.127