Gene detail

Gene detail information of Glyur000071s00005286

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46100.1	2.00E-122	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004485837.1	0	PREDICTED: pentatricopeptide repeat-containing protein At5g46100-like [Cicer arietinum]
Swissprot	tr\|Q9FNL2\|PP418_ARATH	1.00E-148	Pentatricopeptide repeat-containing protein At5g46100
trEMBL	tr\|A2Q513\|A2Q513_MEDTR	0	Pentatricopeptide repeat {ECO:0000313\|EMBL:ABN08713.1}

Sequence

Transcript Sequence

>Glyur000071s00005286.1
ATGAAATATAGAATACGATATGATGACGATGTTCCACTCCCAAAAAAACTAGTATTATCAATTGGGGTCATGGGCACTAAAACTTTGTTCAAGTGGCCAAAGCAAATTACAAATTCCCTAGTTGAGAAGCTAATACAAGCTGAAAAGGACATACACAAAGCTGTTCGTATGTTTGATTCCGCAACAGCTGAGTATAGTAATGGGTTTCGTCATGATCACAAAACTTTTGGCCTCATGATCTCTAGGCTGGTCGCTGTGAACCAGTTTAGGTCAGCAGAAGGAATGCTGGAGAGAATGAAGCAAGAAAATTGCGGGGTTACAGAGGACATATTTTTGACTATATGCCGGGGTTATGGACGCGTGCATAGGCCACTTGATGCCATCAGGGTTTTCCACAAAATGGAAGACTTTCAGCTTAGGCCTACCCAAAAGACTTACCTTACAATATTTGATATTCTCGTGGAGGAAAACCATGTAAAAAGGGCTATTGGTTTTTACAGGGAGATGAGAGAAATGGGCATTCCACCTAGTGTTGTTTCCCTCAATATTTTGATCAAGGCCCTCTGCAAAAACNAGGAAACTATTGATGCTGCTTTCCNGATATTTCGTGAAATGCCCAACCGTGAATGCCAGCCTGATTCATATACATATGGTACATTGATTAATGGGCTGTGCAGGCTTGGAAAAATCAGTCAGGCAAAGGAACTATTTGAAGAGATGGAGGAGAAAGGTTTATCACCTTCTGTTGTTACCTATACTAAAGGAAAGCTTAGTGAAGCTGTGGAGATTCTTGACAGGATAAGGCTTCAAGGCTTGAAACCAAATGCCGGGTTGTATGGGAAAATCATCAGTGGCCTCTGTGCTGCATGCAACTATCAAGAAGCTGCAAACTTCATTGATGAGATGGTACTTGGCGGTATCTCACCAAATCGAGCAACNTGGAGCCTTCATGTTAGAATGCATAACAAGGTGGTCCAAGGTCTTTGTAATAATATTGATCCACATCGTGCATTTCAATTGTATCTTAGCATGCGTACTAGGGGTATCTCTGTTGAAATTGGCACTTTTGACTGTTTAGTCAAAAGCTTTTGTAAGAGAGGAGACCTGCACAAAGCTGCTCGGATTCTTGAAGAGATGATATTAGATGGCTGCACTCCAGATGAGGGAATATGGAATGTATTAATGTGTGGACTTTGGGATCGGAAAAAAGTGAGAGAAGCCACTGAGCTCTTGCTGGCCGAGCTGAAGCAGAAATTTGTTGAAGCTGAAATGACCGAACATGTGCAGCTTTTTTCAAGTCTTGATCTCACTTTTTCATCTAAAAGGGTTGCTGTGCTTTGATATCATTGCTTCCATGACCAAGGATCAAAGCTTCAAACTGAGGCAGTAGATGTGTTGTGTGCAAGATTTACGTTGGGGACTGACTTTATATTCCTTAACACCTCACCCTCTCTTTTTGTGGACACTGCACGGTTCCTTCATATGGTGTCCCGTCACCCATGACTCTCCCCCTATCTGGTGATTAACTCCATTCCTCAATTTAATACTCATTATTCGAACTCAACATACTAGAGATGTACTGAGAACCAGAATTCATTTTTCACATACAACTTTAGCACAAAACATACCGTGCATATGAGACCACATCGAACAGTACATCGAAAACAAACGGGAGGACAGAAACAAGACAGTGAACATAAACAACCGGGGGAGACCATAATACTAAATCAACAACGACTACGATTCCTGAATTTTCCTACTTCATGGTAGAGCCTGAAGGATTATAAACAACGAAACTGTTTTTCATGCCAATACATAAGTATGCCACCCATGTATTAGATAAATTTGCAATTGAATACTTTGCAATATTAATAATGCATGCATTTCAATTAAAGGGCAATCTGGTGTTCAGGGAAGTATGAAATCCTTTTATGGGTTTTTATGTAAGTCACCTTACCTTACATTTGTAAAGTATTTGCAACAGGTTCATTTTATGAAATAATGCATTTCGATTGTGTGTATAATTTGTTCCCAACACGATAATTCACTAGTCAGATAAATTATTGAAATCGGTTACAGACATGAACATGAAAAAAGATATCAATCATTAATTTGCTGAAAGGGGGAAGCCAATTCCGTGTCTGTCTGTAGGAAATGCAACAAACAGCATGCTGCAAAAAACGCCAATGCCCACAGGCAACACCGTGAGGATTTCCTGTGTCTCATTTGATGGTTCTGGGAAAAAGCAGTTCACCACATTCTGATCAAATAATGCAATTGCTGCAAACACCAAAATCGACATCACTGCATGCATGAAATCTATAAACCGCAGGCGATATTTTGCAGCAACTTGGGGTGGAAGGGTGGTTGATCCATCAATGATCCACAAGCCCCTGATGGTGGCAAACCCATAACTGATGTTCCCCTTGCTGTCTCTGAAGCTATCAGTGAAGGATAGCAGGAAGCATGAGGCACCACAGAGAGACACAAGTGCAGAAGTCATGAACTTGCTGACCGAGTCACAGTTGCCAACATTTGTGAAGATTGGAGACAGAAGTTGGAAAGCGAGAACGGTGCCGGTGGGTAGGAGGTTGGCCAAATGGGCTGTGCTCTGAAATGTCTGGCTGATGGCTTTCTGAATCAGGTTTCTCTCTGCTTCTGGAACCTCCATGTTTCGCAGCAGCGGGAGCTTTTGTTCATCATCATTATTCTTAGAATCATCCATTTCTAATTTGATGTCCATGGATAATACAACCACCTTTTTCAGCTAGCTGCCTTTGCTGTTCTGTTTTTCTGTTTGTTGTTTTGATCACCTTTGTATTTGCAGCATGGGTTTGATGAAAAGGGCATATCTATATAGGTCAGCAAAATTAGAGTGGCACCAAAGGGATGGAAGGGAAGGGAAGGGAAGGGAAGGGAGGTTTGTCATTACTTGCAAGAAACACAAACTAAAAACTTGATAAAGCAGGTTTCAATAGGTTCCTGAAAAAGTAGTTTAGAAGAAACGTTGTGGGAAGTGTGGTATTTCCTGTTTTTCTTTCCTTTTTAAAACATAAAAGATGAANATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00071	332003	336241	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000071s00005286.1	PF01535.15	PPR	75	104	0.076
Glyur000071s00005286.1	PF01535.15	PPR	145	174	0.029
Glyur000071s00005286.1	PF13041.1	PPR_2	178	226	2.80E-16
Glyur000071s00005286.1	PF01535.15	PPR	279	306	0.2
Glyur000071s00005286.1	PF12854.2	PPR_1	348	379	2.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.362
SRR1783600	control	1.444
SRR1783602	moderate drought stress	1.382
SRR1811619	moderate drought stress	1.306

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.171
DRR006520	Root Summer glycyrrhizin high producing strain	4.158
DRR006521	Root Winter glycyrrhizin high producing strain	1.500
DRR006522	Root Winter glycyrrhizin high producing strain	1.463
DRR006523	Root Summer glycyrrhizin low producing strain	4.935
DRR006524	Root Summer glycyrrhizin low producing strain	4.810
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.718
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.654

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.933
SRR2868004	Drought Stress (root)	2.927
SRR2967015	Control (root)	2.035

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.497
SRR9715740	Leaf	1.153
SRR9715741	Leaf	0.570
SRR9715739	Root	0.301
SRR9715742	Root	1.979
SRR9715743	Root	2.223

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.937
SRR8749028	MeJA induced 9h	2.026
SRR8749029	MeJA induced 9h	1.601
SRR8749030	Uninduced	1.157
SRR8749031	Uninduced	1.073
SRR8749032	Uninduced	1.110

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.691
SRR8400027	Control - Root	2.048