Gene detail

Gene detail information of Glyur000071s00005281

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14600.1	5.00E-124	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_004485841.1	0	PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trmt61a-like [Cicer arietinum]
COG	YP_006773547.1	4.00E-45	tRNA methyltransferase complex GCD14 subunit [Candidatus Nitrosopumilus koreensis AR1]
trEMBL	tr\|V7AKG9\|V7AKG9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW05348.1}

Sequence

Transcript Sequence

>Glyur000071s00005281.1
CCGTTGTGTTCTAGCGCAGAGAGTAGGCTTGGAAACCCTGATCGAAGGCGTACCCAATTTCGGTTCCTCAACTTGTAAATCCACTAATTGGGACAAGCAATTTTTCAACTTGATTAGTAAAGATAAAAAGCTTGCTCAACTCAAATTCCTGCTGGTTGGTTTGGTCCTTCATCCATACACTTCTTTTCTTTGGTTTTTCAAAAAATGTTTGTAACTTTATTTGGTTTTTCTTCTTCTGTTCTAACCTTCTATATGTCAAAGTTCTGTTTGGAAAAAAAATATATATAGGGGATTCTATGCTGGAAACATACTCACACCACCATTATAATGGCGAAAGTGTTTTAGTGTGGCCATAGTATAAAACGAAGAAAAGTTCTTAACTTCATTAATACTAACCTCGTTCATTCAGGGAATGGGTGGGTCAGGTTTTCATCATACTACTTTTACTTTCATCAGTTTTATGCTCAAATAATATGTATGAGTTTTGGGAATGAATGGAATGAAGAAGTGTATATAGTTAATGTTTTCGTGAAACTTGACTTGAANAATGAAGACTATACTCCAACAACACACATCATATATGTCATTGGTTTCTCCCTTTTTTGATTGGCAGATAGTTGTTCTTTTTTTATTGGAGTGGAAGATTTGAAGACTTGTAAGATGTTGGCTAGTCATCCTGCAAAAAGAATATCATTCAATCGATCGATTAGCAATGGTGATCTGGTTATTGTTTATGAAAGGCATGACAGCATGAAGGCTGTAACAGTNTCTGAGGGTTCAGTCTTGCAGAATCGTTTTGGTGTTTTTAGACATTCAGATTGGNTTGGAAAGCCATTTGGGTCTAAAGTATTTAGCAGTAAGGGTGGTTTTGTATACTTGTTAGCTCCCACACCAGAATTGTGGACTCTAGTATTAAGCCACAGGACTCAGATTCTCTATATTGCGGATATTAGCTTTGTCATCATGTACTTGGAGATTGTTCCCGGTTGCTTGGTTCTGGAATCTGGAACTGGAAGTGGGTCTTTAACTACTTCACTTGCAAGGGCAGTTGCTCCTACAGGACATGTCTATACATTTGATTTCCATGAACAAAGGGCTGGATCAGCTAGGGATGATTTTGAGAGGACAGGTCTAAGTAGCTTAATCAGTGTGGGAGTTAGGGACATTCAGGGTGAGGGATTTCCCGATGAATTTATAGGCTTGACTGACTNTGCATTTTTGGATCTACCTCAACCCTGGCTTGCCATTCCTTCAGCTGCAAGAATGTTAAAACAAGATGGCACGTTGTGCTCGTTTTCTCCATGTGTTGAACAAGTACAACGATCATGCNAAGCACTTCGAACCTGCTTCACCGATATAAGGACATTTGAGGTACTCTTACGCACATACGAAGTTCGGGAAGGGAAAGTGGAAAGCTTTCATGGGGATGGCAATGGTTCTAATGGTTCTCTTCCTTGCAAGAGGAGGCAGTGTTCAGATGGAAACTATGTGCTCAGCGGTACTACTACTTCTGTCATGGCTAGACCTTGTGGTGAAGCTCGAGGTCACACAGGCTATTTGACATTTGCAAGACTTAAATGCCTCTCATGAGCAGTGCTATCAATATCATGTCCTTCATTTTTTGTAGCAGAGAAAAAAAACTTTATATTTTTGTACCTCTTTTCAATTTGAGCATCATGCAAGAAATTGTTTTCTGTTCGTTATAATCATAGATTTAGAAAGGGATTTTTTTTTTGTATGTCATAGGTGCTTGGCTACAAATATGCCTCAGAACAGTGCGAAAATTATTTGCACAAAGTTGGTACAATGTGTGTGACATTCCACAATTAACTTTATTCATTTTCCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00071	304681	307283	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030488 tRNA methylation

cellular_component
GO:0031515 tRNA (m1A) methyltransferase complex

molecular_function
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000071s00005281.1	PF08704.5	GCD14	69	304	6.70E-92

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.059
SRR1783600	control	0.060
SRR1783602	moderate drought stress	0.185
SRR1811619	moderate drought stress	0.144

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.878
DRR006520	Root Summer glycyrrhizin high producing strain	0.812
DRR006521	Root Winter glycyrrhizin high producing strain	1.026
DRR006522	Root Winter glycyrrhizin high producing strain	1.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.360
DRR006524	Root Summer glycyrrhizin low producing strain	2.376
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.308
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.301

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.220
SRR2868004	Drought Stress (root)	4.708
SRR2967015	Control (root)	6.101

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.182
SRR9715740	Leaf	2.266
SRR9715741	Leaf	0.598
SRR9715739	Root	0.996
SRR9715742	Root	0.360
SRR9715743	Root	0.166

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.438
SRR8749028	MeJA induced 9h	1.622
SRR8749029	MeJA induced 9h	0.718
SRR8749030	Uninduced	1.418
SRR8749031	Uninduced	0.083
SRR8749032	Uninduced	0.154

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.744
SRR8400027	Control - Root	3.244