Gene detail

Gene detail information of Glyur000071s00005273

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33860.1	9.00E-65	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
NR	XP_003543018.1	0	PREDICTED: auxin response factor 3-like [Glycine max]
Swissprot	tr\|Q8S985\|ARFO_ORYSJ	2.00E-73	Auxin response factor 15
trEMBL	tr\|I1M1Y1\|I1M1Y1_SOYBN	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000071s00005273.1
CTACAGTCTTTTGTTTTTGCATACAGCTTTCTTCTCTCTCCTCACTTTCTCTCTCTGCCTTCTGCCACACATCACACCCAACAGTCTCAGCATTGCAGCAGCAACTGCAGCACTGCTGCTGCTGCAACTGGTGCCTCAGCTTGCAGACGAGCAAAAACAAAAGGCCCAAAGAAATAAATAAATAAAGGAGGGAAAAAAATGAATGAGTAAAGATAAAAAGAGGATAAAAATCCCATTTTTATATGACTCCCAACTTAAATCTCAATGAAAGGTTGATTTGATGCTACCCCAAAATACCCATTCACGCACCCCTCCCCTCTCGGCCAATTATTATAAAGCAAAAGAAAAGAAAAACCCAAAAAAGAAACAAAAGGGAATTCAGCATTGAGAGAGAGTGATAGCTCAGTGGAGGAAAGAGAGAGAAAGAGAAAGAGGGTCTCTTTCTTTTTGGAGTATTGGGTCACAGCCTCTTTTAGCAATGCCAAAGTTACTCAACAACACACCTCACGCTCTCTGAAAATGCAGGCATGAAATCACTCATCATTGAAATCTTCCCCTCCCTCCACCTCTTCCTCCAAAGTGCTTCCTTTTCTGCTTCTCGTTCCTCACACCCACTTGTTATTAGATTCGCTAACATTGCTAACACCACTTGGTTCCCATGGGGTTGATCGATCTCAACACTACAGAGGACGATGAAACTCCATCGTCCGGTTCCAACGCTGCTTCTTCTCCTTCTCACTCGGGCATAAGCACTTCCGCTTCAGCCGTGGCTCCTCCAACTCCTACTCATCCACCTTCTGTGTGCTTGGAGCTGTGGCACGCGTGTGCTGGCCCTTTGATCTCTCTGCCGAAGAAAGGAAGCGTTGTTGTGTATGTCCCACAGGGACACTTTGAGCACGCTCAGGATTTTNCTCCGGTCACTGCCTGTAACATTCCACCTCATGTCTTCTGTCGCGTTCTCGATGTCAAGCTCCATGCAGAGGAAGGGAGCGATGAAGTGTATTGCCAAGTCTTGTTGGTTCCCGAAAGTGAGGTGAGGCTTACTTGTGCTTATTATGTGATCTTACTTTGGGGTGAGGATGGAGAACTGAGACTAGGGATTCGTAGGGCAGCTCAGTTGAAAAGTGCTGGTTCCTTTGGAGTTCCTTCTGGCCAGCAATTGAGTCCTGGCACTCTCATGGATGTTCTCAATGCTTTATCTAAAAGATCTGCTTTTAGTGTTTGCTATAATCCAAGGGTCAGTTCTTCGGAATTCATCATACCTGTCCAAAAATTCTTAAAGAGCCTTGATTATTCTTATTCAGCTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATTCTGCAGAAAGAAGATTCACTGGATTAATTGCTGGAATAAGTGATGNGGATCCTGTTAGATGGCCGGGATCAAAATGGAGATGTCTATTGGTAAGGTGGGATGACATAGATGCAGCAAGGCATAACAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCCGCTTCCAGTAACTTGATGGCAGCTGGTTTGAAGAGGACCAGGATTGGGTTGACTTCAACAAAGCTAGAATTTCCAGTTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTGAGGTTCCGAAAGGTCTTGCAAGGTCAAGAAATTTTTGGTGTTGATAATACTCCCTTTGACAGTATTAATGCTCGGAGTCCCCGGTTATATGAGCTAGGGAGGTGCTATCCTGGTCCAAACTGTTCCGGGATTGCTGCTGCAACAGGAAGCAATATCAGAATCCCACAAGTGACTTCTGATNTTTCCTCCTGCAATGGCATAGGCTTTAGTGAATCTTTCAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTCATCCCAGTGCACCCTATGGGCGAGCCTTGTCTGTTGACGAAGCTCGTGGAAATGGCTGCTTAGGACTTTATGATAGTTACCATTTGCTTGGCTCCAGAAATGGTTGGTCTCCACAGATGCACGACAATTCATCGCATTTCCATGCATCTGTTACATCCGGGCAAGTGTCATCTCCATCATCCGTGTTGATGTTCCAGCAGGCAGTTAATCCAGCTCCAAACTGTGATTATAATAATAGTAAGCGTAATCAGGAGAGGGAAGATAAAGTCAGTTACCAGGGTTCACACATATCTGAAGTGAAAAGAGGGATGTTTGCACCNTCCCTTCAGGAAGGTACAAATTCTTTTGGTGTGCAGAATTTTCACAACCAGTTGGGCAGTTCAAGGTCTCATGATTCAGTGTCAACAACACTTAGAGGCGGTCAAGAGTTGGTTTCCACGTGTAAAAGTAGCTGCAGACTCTTCGGTTTTTCGTTAACCGAAGGCACACATGTTGCAACTAAAGAGGCTGCTGATGCCTCTACCATCACTTGTACTCAATCGAATTCTGGACCTTCCTTTACTAGACTTGTTGAAGATGANTTCCACACAGGCCATTCACTGAGGAGTAAGGCTGTTGGGAGGTGTGTTGCAGTATTGACATGGGAGTCATCTGTGTGCTGTAGCGAGTATGGTACTGGAATGAGATGGCAGAAGAATCTGTCCTTAGTTTCCATTGTTATGTGCTTTGCTATAATAACTTGGGATTTCAGGAAAGAGGAAAATTGGCCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00071	264263	270451	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000071s00005273.1	PF06507.8	Auxin_resp	177	257	3.50E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.192
SRR1783600	control	40.484
SRR1783602	moderate drought stress	32.604
SRR1811619	moderate drought stress	32.030

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	42.190
DRR006520	Root Summer glycyrrhizin high producing strain	42.354
DRR006521	Root Winter glycyrrhizin high producing strain	6.160
DRR006522	Root Winter glycyrrhizin high producing strain	5.869
DRR006523	Root Summer glycyrrhizin low producing strain	37.101
DRR006524	Root Summer glycyrrhizin low producing strain	37.303
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.976
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.138

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.068
SRR2868004	Drought Stress (root)	22.167
SRR2967015	Control (root)	27.420

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.945
SRR9715740	Leaf	19.749
SRR9715741	Leaf	20.157
SRR9715739	Root	30.373
SRR9715742	Root	21.167
SRR9715743	Root	23.195

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.262
SRR8749028	MeJA induced 9h	0.789
SRR8749029	MeJA induced 9h	1.931
SRR8749030	Uninduced	0.675
SRR8749031	Uninduced	0.221
SRR8749032	Uninduced	0.763

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.737
SRR8400027	Control - Root	34.320