Gene detail information of Glyur000071s00005271 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G28510.1 | 2.00E-51 | Optic atrophy 3 protein (OPA3) |
| NR | XP_004485848.1 | 8.94E-103 | PREDICTED: OPA3-like protein-like [Cicer arietinum] |
| trEMBL | tr|I1L999|I1L999_SOYBN | 2.00E-98 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G07930.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00071 | 244929 | 250144 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000071s00005271.1 | PF07047.7 | OPA3 | 39 | 170 | 2.20E-50 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.995 |
| SRR1783600 | control | 0.973 |
| SRR1783602 | moderate drought stress | 3.997 |
| SRR1811619 | moderate drought stress | 4.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.420 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.437 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.637 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.900 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.392 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.836 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.185 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.481 |
| SRR2868004 | Drought Stress (root) | 30.669 |
| SRR2967015 | Control (root) | 15.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.244 |
| SRR9715740 | Leaf | 4.839 |
| SRR9715741 | Leaf | 6.927 |
| SRR9715739 | Root | 0.243 |
| SRR9715742 | Root | 1.511 |
| SRR9715743 | Root | 1.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.408 |
| SRR8749028 | MeJA induced 9h | 7.698 |
| SRR8749029 | MeJA induced 9h | 11.857 |
| SRR8749030 | Uninduced | 20.209 |
| SRR8749031 | Uninduced | 19.115 |
| SRR8749032 | Uninduced | 14.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.614 |
| SRR8400027 | Control - Root | 9.042 |