Gene detail information of Glyur000071s00005269.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46030.1 | 2.00E-29 | |
| NR | XP_010090451.1 | 1.74E-54 | hypothetical protein L484_011426 [Morus notabilis] |
| Swissprot | tr|Q8LHP0|ELOF1_ORYSJ | 8.00E-53 | Transcription elongation factor 1 homolog |
| trEMBL | tr|W9R774|W9R774_9ROSA | 6.00E-55 | Uncharacterized protein {ECO:0000313|EMBL:EXB39509.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00071 | 233938 | 236209 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000071s00005269.1 | PF05129.8 | Elf1 | 2 | 81 | 5.30E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 51.047 |
| SRR1783600 | control | 51.601 |
| SRR1783602 | moderate drought stress | 97.063 |
| SRR1811619 | moderate drought stress | 96.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 117.812 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 115.837 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.995 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.815 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 152.001 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 152.188 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.120 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.737 |
| SRR2868004 | Drought Stress (root) | 25.067 |
| SRR2967015 | Control (root) | 24.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.666 |
| SRR9715740 | Leaf | 46.495 |
| SRR9715741 | Leaf | 21.043 |
| SRR9715739 | Root | 47.954 |
| SRR9715742 | Root | 47.200 |
| SRR9715743 | Root | 50.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 78.456 |
| SRR8749028 | MeJA induced 9h | 27.188 |
| SRR8749029 | MeJA induced 9h | 47.989 |
| SRR8749030 | Uninduced | 6.870 |
| SRR8749031 | Uninduced | 3.250 |
| SRR8749032 | Uninduced | 11.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 70.610 |
| SRR8400027 | Control - Root | 71.810 |