Gene detail

Gene detail information of Glyur000071s00005262

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49760.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_004485853.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770-like [Cicer arietinum]
COG	YP_004775215.1	2.00E-34	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LT96\|Y5977_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At5g49770 (Precursor)
trEMBL	tr\|G7IFI1\|G7IFI1_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES63932.1}

Sequence

Transcript Sequence

>Glyur000071s00005262.1
CTCCGCTTTGATTATTTGGTGGTGACCCTTTTCTTGCTTTCCATCTGAAACTTGAAAAAGTTTTGATATTTGATTCCACAATCCAACCTCAGAATATCTTTTGAGTTTTGAGTAAAATGGAACAATCACAACATAAAGTGTTTCTTCTTCTTCTTCTTCTGCTCCTGCCGCTGCTTCTTTTCCATGTTGCAGCACAGACACAGACAGACAATCGAGACTTTACTGCACTATCATCTCTCATACAATCCTGGGGGAACAAACCATCAAGTTGGGTGGGTACGGATCCTTGTGGCAGTGATTGGGCTGGAATTCGTTGTACCAATTCAAGAATTACTGAATTGGATCTTTCTTACAGCCCGGGCTTGACAGGAACAATTCCACAAGAAATCGGGAATTTGAAAAAGCTAAAATCCCTAGCAATGGTTAGTTGTGGTTTCTCTGGACGTATTCCAGATTCAATAGGATCTTTGAAGCAGCTTACCTTTTTAGCACTGAATACTAATAAGTTCAATGGAAATATTCCACGCTCTCTTGGCAATCTATCCAACATTGATTGGCTAGATCTTGCTGAGAANCAGCTGGAAGGGACAATTCCTGTTTCTGATGATCAAGGACAACCAGGTCTTGACATGCTCATTAACGCCCAGCACTTTCATATGGGGAACAATAAGCTCACTGGTCAAATACCAGCAAAACTTTTTAACTCCAGCATGCATCTAAAACACGTGCTTTTTGACAGCAATCAACTAACGGGCAATCTTCCTAGATCCCTTAGTTCTGTGAGCACATTGGAGGTGGTGCGCTTTGATAGGAATAAATTAAACGGGGGAGTGCCTTCCAACTTGAACAATCTTGGAAAACTTAGCGAGCTCTATTTGTCTCACAATGAATTCAATGGCTCTCTGCCGGATCTTACTGGAATGAATAGTCTCATCTATGTGGATCTGAGCGACAATAATTTCAATTCGTCCACCATTCCTCCATGGGTTTCGAGTCTGCCAGATACAACAACAGTGTATGTTGTTCCTTACTTGCTTCAATCCGACATTATACCTGTGATTTTACTGAAATGTGGTNACAGGATACTGAAGGACAACAAACTCGGTGGCACATTAAATCTTACCAGTGGCTACAGCAGCAGTCTGCAACTCATTGATTTGCAGAATAATGATATAACCGACCTCAATCCGAGAAACCAAAAATTTAATTTTGACTTGGTACTTGCTGGAAACGAAATTTGTCTTGAAAATGGAGCTTCTGAACAAAGTTACTGCAAAGTACCCCAAGTCATTCCCTCATATGAAACACCAAAAAATAGTTGTTCAACTCCAACTTGCAGTAACAATCAGATTTCCAGCCCCAACTGTAAATGTGCATTTCCCTATGCTGGAGTTCTAGNATCCAGAGCTCTTAGTTTCTCAAACTATAGTAACACAAGTTACTACAGGGAAATTGAGCAGACTTTGCTGGATACTTTTCAAAAGCAAAAAATACCAGTGGATTCAGTTTCTCTTNGTAATCCCTACAAGAATACATCTAATGATAACTTTCAGTTGACTCTGAATGTCTTCCCATCTCAAACCGATCGCTTCAATACNACTGGAGTTTTAAATATTGCTTTTGTGCTTAGCAACCAAATTTACAAACCCCCAGAATTTTTCACCCCTTACGTATTCAATGGTCAAAATTATGAATACCATGCAGATGAACCTAAAGGATCAAAGTCAAACCATACAGGGGTTATAGTTGGTGCAGTNCTTGCTGTATTGGTCTTTCTTGTACTAGCAGTCCTTGCAGGGATATATGCCATTCGCCAGAAAAGAAGAGCAAAAAGATCTGCTGGGGCAAACCCTTTTGTAAACTGGGAACAGAACAAGAACAGTGGCACTGCTCCTCAGTTGAAAGGAGCACGATGGTTTTCTTTTGAAGAGATAAGGAAATACACCCACAATTTCTCAGAAGCCAACAACATTGGATCTGGGGGCTATGGAAAGAATGACAATCCAAATATATTTGTCCATATCATAAAGTCAACACTAAAAATTCTTTATAATACCATTGATAAGGGTTTACAACAAACAATTCAAGGAAAGTCTGGGATCTGGATGGATTGGATAAGGAGGCTTAAAGTTGCATTGGGTGCTGCCAGGGGTCTATCCTATCTACATGAACTTGCTAATCCACCAATCATACACAGAGACATAAAATCAAGCAATATCCTACTTGATCATCACCTCAANGCAAAAGTTGCCGATTTTGGTCTCTCCAAGCTTCTTGTTGATAGTGAAAGGGGCCATGTCACTACTCAAGTCAAAGGGACAATGGGNTACTTGGATCCTGAATATTACATGACCCAGCAGTTGACTGAAAAGAGCGATGTATATAGCTATGGAGTGCTAATGCTGGAACTAGTAACAGCAAGAAGGCCAATAGAGCAAGGAAAATATATTGTAAGAGAGGTAATGAGGGTAATGGATACATCAAAAGATTTATACAACCTTCATTCCATTCTAGATCCAACTATTATCAAAGAGACAAGACCAAANGGTTTAGAAAGGTTTGTGGAACTGGCAATGAGGTGTGTCAAAGAATATGCAGCTGAGAGACCTTCAATGGCTGAGGTTGCGAAAGAGATTGAGAACATAATCGAGCTTGCTGGAGTGAACCCCAATGCTGAATCAGCTTCAACAACAGAAACATACGACGAAGCAAGCGAGGGAAAGGTCCAACATCCTTATGTCAACGATGAATTTGAATATAGTGGAATTTTTCCATCAATAAAGGTAGAACCTCAATGAGTTCTGGTATCTTTTCTTTTGTATTGCTTTTCCCACTTCAGATGCAATCAGTGAGGTCTGGCATGTGGATTTTGGATTTGAGACCCCATAGGACTCCATGTAGGTGAGTGCTTTGGAAAAACTCATTCCCTATAGAAACAGATGAGGGTTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00071	206535	214408	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.3.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000071s00005262.1	PF00069.20	Pkinase	652	838	3.50E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.380
SRR1783600	control	2.448
SRR1783602	moderate drought stress	1.592
SRR1811619	moderate drought stress	1.488

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.658
DRR006520	Root Summer glycyrrhizin high producing strain	0.656
DRR006521	Root Winter glycyrrhizin high producing strain	0.037
DRR006522	Root Winter glycyrrhizin high producing strain	0.036
DRR006523	Root Summer glycyrrhizin low producing strain	1.535
DRR006524	Root Summer glycyrrhizin low producing strain	1.334
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.746
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.792

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.683
SRR2868004	Drought Stress (root)	76.095
SRR2967015	Control (root)	57.833

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.135
SRR9715740	Leaf	12.773
SRR9715741	Leaf	17.296
SRR9715739	Root	0.997
SRR9715742	Root	4.985
SRR9715743	Root	4.177

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.376
SRR8749028	MeJA induced 9h	35.563
SRR8749029	MeJA induced 9h	16.583
SRR8749030	Uninduced	59.455
SRR8749031	Uninduced	63.376
SRR8749032	Uninduced	7.942

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.181
SRR8400027	Control - Root	16.192