Gene detail

Gene detail information of Glyur000071s00005259

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45750.1	4.00E-41	RAB GTPase homolog A1C
NR	ACJ83325.1	3.14E-58	unknown [Medicago truncatula]
COG	YP_008153306.1	4.00E-16	hypothetical protein SCE1572_34665 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q9FK68\|RAA1C_ARATH	8.00E-58	Ras-related protein RABA1c
trEMBL	tr\|B7FFD5\|B7FFD5_MEDTR	1.00E-58	Putative uncharacterized protein {ECO:0000313\|EMBL:ACJ83325.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000071s00005259.1
CACTTTGGTCACCACCGCCATCATTCACCAAGACAAGTTGCCAACTAAAANCCCCCCACATTTGCAGCATTGCTGTTTCAACTTTCAATCTCGTTGTTACCAGAAGTTCCTTTTTTCTTTCTTTTTTCTGTTGACATTGTTCCAAATCTGGAATTCAAAACAAAGTAGTCTGTTTCTTTGGTTATTAATACAGATATATAGCAACCCATTTGAATCTGAGAGAAAAATCAATTTTTTATCCTTGGTTTTCTCTCTAGCCAAAAACCAGAGAGAAAACGAGGGGTGTGTGTGTGTGTGGCAAATGGGGGCGTACNGAGCCGATGACGATTATGATTATCTGTTCAAGGTGGTGTTGATTGGGGANTCTGGTGTGGGAAAATCCAACCTTTTGTCAAGGTTCACCAAGAATGAGTTTAGCCTCGAATCCAAATCCACCATTGGGGTTGAGTTTGCCACCAGAAGCACTAGGGTAGATGATAAGGTTATCAAGGCTNAGATTTGGGACACTGCTGGCCAGGAAAGGTACCGAGCAATTACAAGTGCATATTATCGAGGAGCAGTGGGTGCTTTACTAGTCTATGATGTTACCCGCATGTTACCTTTGAAAATGTGGAGAGATGGCTGAAGGAGCTGAGAGATCACACGGATGCCAACATNGTAGTGATGCTTGTTGGGAACAAAGCGGACTTGCGCCATTTGCGAGCAGTTTCAACCGAAGATGCTACAACTTTCGCAGAACAGGAGAATACATTCTTCATGGAAACATCTGCCCTCGAGTCAATGAACGTTGAAAACGCCTTCACAGAGGTGCTGACTCAGATCTACCGTGTTGTAAGCAAGAAGGCACTTGACATTGGTGATGATCCAGCAGCATTGCCAAAAGGACAGACAATTGATATTGGATCTCGTGATGATGTATCAGCTGTGAAGAAAGCTGGATGTTGCTCTGCTTGANCATGCTGTAAAAATCTCTGTATTTTTACTTTAAACCTTTGCCCTGTTCATATCCTTGTAGAGTTCAGCCGTATAGCATGAAAAATGATTGTCTAGAGAGCAGCACTCTCTAAACTTTCTGATTTGGTCTGTAAAGAAATCTGTTCAATATTAGTTAGATGTTTAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00071	190005	192321	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000071s00005259.1	PF00071.17	Ras	15	98	1.00E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.301
SRR1783600	control	1.332
SRR1783602	moderate drought stress	1.316
SRR1811619	moderate drought stress	1.279

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.032
DRR006520	Root Summer glycyrrhizin high producing strain	1.604
DRR006521	Root Winter glycyrrhizin high producing strain	4.377
DRR006522	Root Winter glycyrrhizin high producing strain	3.864
DRR006523	Root Summer glycyrrhizin low producing strain	1.574
DRR006524	Root Summer glycyrrhizin low producing strain	1.773
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.476
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.424

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.446
SRR2868004	Drought Stress (root)	4.124
SRR2967015	Control (root)	5.169

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.297
SRR9715740	Leaf	0.056
SRR9715741	Leaf	0.000
SRR9715739	Root	0.132
SRR9715742	Root	0.716
SRR9715743	Root	0.099

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.169
SRR8749028	MeJA induced 9h	2.989
SRR8749029	MeJA induced 9h	2.626
SRR8749030	Uninduced	2.033
SRR8749031	Uninduced	1.911
SRR8749032	Uninduced	5.022

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.059
SRR8400027	Control - Root	2.876