Gene detail

Gene detail information of Glyur000071s00005255.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36230.1	6.00E-113	Aldolase-type TIM barrel family protein
NR	XP_004485858.1	2.66E-176	PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic-like [Cicer arietinum]
COG	YP_002605709.1	8.00E-99	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Desulfobacterium autotrophicum HRM2]
Swissprot	tr\|O82782\|HIS3_ARATH	3.00E-147	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic (Precursor)
trEMBL	tr\|G7IFI7\|G7IFI7_MEDTR	4.00E-171	Aldolase-type TIM barrel family protein {ECO:0000313\|EMBL:AES63938.1}

Sequence

Transcript Sequence

>Glyur000071s00005255.1
GTGAGAGTCANAGACATAACAAGGTCTCCCTAAACCTTAGAAGCCGCCCGGTTATTCACTCAAACCGAAGTGAAGTGATGAATTAATAACTTGCTGTTCTTGTACCGAAGAAGATGGTGGGAGTGGTACTGTGATTAATCTCTCTCTCATAACTTCCACTGCCACTTTGCTCGCCGCTGCACACTCACCAAACCCTTGCCTGTGTTGCGGAAAACTCCAGCACTCAATGCGCGATCCTGCTGCCACGTGTTCCTTCCGAGGCTTCCTACATTCTCCAATCTCCCACCCCATTCAACTTGGTTTTCTCAGGCTCAAGCCTCCAACCTTCTCCTCTGTAGCTTCCAAATTGCAGCTGAGGTTCATGTGTTTATTGTGGCAGGGGAAAGTGAAACAAATTGTTGGGTCAACCCTTCAGGATTTGAAAGGGGATGTTGGTGGGTCAGATCCCGTGACCAATTTTGAGTCTGACAAGTCAGCAGCTGAGTATGCCACTCTTTACAAACGAGATGGTCTCACGGGTGGTCATGTCATCATGCTCGGTGCTGACCCTTTGAGCAAAGCTGCTTCCCTTGAAGCTTTGCNTGCTTATCCCGGTGGTCTGCAAGTTGGAGGGGGAATAAATTCTGACAATTGTTNGAGTTACATTGAGGAAGGAGCAAGCCATGTCATTGTGACATCTTATGTATTCAACAATGGACAAATGGATCTTGAAAAGCTAAAAGATCTTGTTCGGATTGTTGGAAAAGAGAGGCTTGTGTTGGATCTCAGCTGCAGAAAAAAGGAAGGTAAATATGCAATTGTCACTGATAGATGGCAGAAGTTCAGTGATGTGTCACTTGATGCTGAAGTAATGCAGTTTCTTGCCAACTTTGCTGATGAGTTTCTGGTTCATGGTGTTGATGTTGAAGGGAAGAAGTTAGGAATTGATGAAGAGCTTGTGGCTTTGCTTGGTAAACATTCACCAATTCCTGTGACGTATGCGGGTGGTGTGACTGTAATGGCTGATTTAGAGAGGATAAAAACAGCTGGAATGGAGCGTGTGGATGTTACCGTGGGAAGTGCCTTGGATATTTTTGGGGGGAACTTGCCTTATGAAGAGGTTGTAGCTTGGCATACCCAGCAAAAGGCATCCGTGGCTTAGTTAGGGTCGTTAAGACCTGTTTAATTGTTTCTCTTGGTGTAACCTTGAATCCGGTGATTTTTCTATCTATCTCTGTGATTCTAGCATTTGNCATGATTATTTTCTGCTACTACGCTTGCTTGCATCTTTGTGATGTATATGCAAGGCGCAATGCATATAGATTTTTATCCATGTACAATAATCTTCTTCATATCAACAGAGCATTGTGTTATGTTTCTGCATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00071	160734	165851	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01814	hisA	EC:5.3.1.16	Biosynthesis of amino acids	map01230
			Histidine metabolism	map00340

Gene Ontology

biological_process

GO:0000105 histidine biosynthetic process

GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000071s00005255.1	PF00977.16	His_biosynth	77	280	1.50E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.863
SRR1783600	control	22.212
SRR1783602	moderate drought stress	14.551
SRR1811619	moderate drought stress	14.817

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.492
DRR006520	Root Summer glycyrrhizin high producing strain	18.206
DRR006521	Root Winter glycyrrhizin high producing strain	12.558
DRR006522	Root Winter glycyrrhizin high producing strain	12.132
DRR006523	Root Summer glycyrrhizin low producing strain	15.328
DRR006524	Root Summer glycyrrhizin low producing strain	14.454
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.178
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.372

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.621
SRR2868004	Drought Stress (root)	19.096
SRR2967015	Control (root)	20.214

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.235
SRR9715740	Leaf	8.595
SRR9715741	Leaf	5.232
SRR9715739	Root	24.522
SRR9715742	Root	11.374
SRR9715743	Root	14.775

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.116
SRR8749028	MeJA induced 9h	17.382
SRR8749029	MeJA induced 9h	19.612
SRR8749030	Uninduced	9.043
SRR8749031	Uninduced	7.645
SRR8749032	Uninduced	8.375

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.518
SRR8400027	Control - Root	24.733