Gene detail

Gene detail information of Glyur000071s00005253.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	8.00E-125	Leucine-rich repeat protein kinase family protein
NR	XP_004485915.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Cicer arietinum]
COG	YP_004775215.1	6.00E-50	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	5.00E-156	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|A0A072V4N4\|A0A072V4N4_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:KEH36626.1}

Sequence

Transcript Sequence

>Glyur000071s00005253.1
ATGGGCCTTAAAGGTACGATTTCCCCGCAACTAGGGAATCTCTCTTTCCTCTCTTTGCTTGATCTCCAAGGCAATAGTTTCTATGGTCAGTTGCCACAAGAGTTATTTCGGTTGCATCGATTGAAGTTGCTCNATCTTGGCCATAATAATTTTTCTGGTCTCATCCCGCAATCTGTATCCAACTTGTCGATGTTAGAGCACCTAGANTTCTCCTATAATTTCTTCAAAGGAACCATTCCACCTGTCATTGGTCAACTTCGTCAGCTGAGGATTTTGGATATTAGAAAAAACAAGTTGTCGGGAATCATACCACCAACGGTTTCCAACCTGTCTTCGCTTGAACAAATCCATTTATCTTACAATTCCTTGTNGGGAGAAATTCCAAAAGGAATTGGTGATCTTACTCAGCTGAGATTTGTGAACCTTCAATATAATATGCTTTTCGGCAATGTATCATCCACAATGTTCAACAACTCATTGTTGCAATATATTGGTCTTGGTTTTAATAATCTGTCNGGCGATCTTCCATCAAATATTTGTCAAGGGCTTCCAAACCTTAGATTACTCTATCCCTACTCTAATGATATTACTGGTGAGATGCCGACTATTTGGCGTCACTGCAAAGAGTTGGAAGACTTAGAATTATCTTTCAATAGTTTTGACCAAGGACGTGTGCTAGATGACATTGGAAACTTGACCAAGCTTCAATATTTGTATCTTTCTACCGACAACTTGGAGGGTGAAATTCCATTCTCCCTTTTCAACATCTCTTCTTTGAGATACATCAACCTTGACAGAAACAATTTTAATGGAAGCCTCTCACATGAGATGTGTCGTCAACTTCCTCAACTTGAAATGTTTATTTTACAATTTAACCAATTTGAAGAAAGCATTCCACGATCAATTGGCAACTGCACATCGCTGAATATGTTAATTTTACAGGACAACTTTTTTACAGGTTCAATACCGATGGATATTGGCCATCTTAGTGAACTTGAGACTCTACAATTGGGAAATAATAGCTTGAGTGGACCTATTCCTTCAAAACTCTTCAACATTTCAGCATTGACATACTTGCATCTTGAACTAAACCATCTCTTAGGAACTCTTCCGTCAAATATGGGATATGGCCTTCCTAACCTTCAAGAACTACACATGTATGGAAATAAACTTGTTGGAAAAATTCCAAATAGTATATCCAATGCTTCTATGCTTGTTAAAATTGACTTGAGTGTGAATGAATTCAGTGGAATTGTCCCCAATGCTTTTGGAGATTTAAGATTCCTCGAATCACTCATCATAGGTGGCAATAATTTAACAACAGATGATTCTTATGAATTCAACTTCTTTACTTCGCTAACAAGTTGTAAATATTTGGCATATTTGGAAGTATCACAAAATGGTTTACTATCCAAACTTCCCAAGTCAATTGGAAACTTATCTTTATTGTACTTTTGGGCAAATTCTTGTGGAATTGATGGCAATATTCCAGTAGAAATCGGAAACATGAGCAACTTGATACGTTTATCTCTGAGTAGGAATGATATAAATGGACTAGTGCCTGCTACAATCAAAGGGCTACAAAAACTTCAGCATTTGAATCTTGCCTACAATGGACTACAGGGATCTATCGTTGATGAGCTTTGTGAAGTTAGAAGTTTGAGTGAGTTGTATCTGACAAATAATAAACTTTTTGGAGTGTTACCAACATGCTTGGGAAATATGACTTCTCTTAGAAAGGTATACATAGGATCTAATAGATTGACCTCTGGGATACCTTCCTCTTTTTGGAGTCTCAAAGATATCTTAGTGTTGAGAGCTCTTGTACTATTAGATTTGTCAGGAAATCAAATTTCAAGCAACATTCCCACAACCATCAATTTCTTAAAAACTTTGCAAACTCTCTCCTTGTCGCATAACAAATTGCATGGGTCAATTCCCACATCACTTGGTGAAATGGTAAGTTTGAGCTTCTTAGACTTGTCTCAAAATCTTCTAACTGGTGTGATTCCAAAATCCTTAGAGTCGCTTCCCTATCTCAAGTACATCAACTTTTCATACAATCAATTACAAGGAGAGATTCCGGATGGTGGACTTTTCAAAAATTTCACAGCTCAATCTTTTATGCATAATGAAGCACTTTGTGGCAATCCTCGCCTACAAGTGCCTCCATGTGGGAAACAAGCTGGGAGAAGATCAATGACAAAGATGCTATTAATCAAAATCATATTGCCTATAATTGTGTCAATCATTTTGGTTGTTGCATGCATAATACTTCTACAACACAAAAGAAAAAAGGTTGAAAACCCACTTCAAAGGGTTTTATCAACTTTAGGAGTTCAAAGAAGGATTTCTTATTATGAACTTGTACAAGCAACTAATAGATTCAATGATAGTAATTTAATTGGAAGGGGGAGCTTTGGATCTGTGTATCAAGGGATGCTTTCTAGTGGAAAGAATGTTGCAATTAAAGTAATTGATTTAAACCTAGAAGCAACATCTAGGAGCTTTGGTGGAGAATGCAATGCAATGCGCAATCTTCGACATCGAAACCTCGTCAAGATTATTAGTAGTTGTTCAAATGTTGATTTCAAATCTATTGTGATGGATTTCATGTCAAATGGAAGTCTGGACAAATGGTTGTACTCAGATAACTGTTGTTTGGATTTCTTACAAAGGTTGAATGTAATGATAGATGTGGCATCTGCATTAGAGTATCTCCATCATGGTTCTTCAATTCCAGTGGTTCATTGTGATCTCAAACCAAGTAATGTTTTATTGGATGAAAACATGGTTGCACATGTTAGCGATTTTGGCATTGCCAAGTTCTTGGATGAAGGACAGTCAAAAACTCATACCGAGACTTTAGCTACTCTTGGATACATTGCACCAGAGTATGGATCTAAGGGAATCATTTCTATTAAAGGAGATTTTGTGGATTCCAATTTAGCCCAACAACATGGAAAACAAATTGATGACATATTGACTCATATATCATCTATTTTGGGTTTAAGCTTAAGTTGTTGTGTAGATTCACCTGAAGCACGAATTAGTATGGCAGACGTGACTCGATCTTTAATCAAAATCAAGACATTATTCACTCGCATGTGA

Protein Sequence

>Glyur000071s00005253.1
MGLKGTISPQLGNLSFLSLLDLQGNSFYGQLPQELFRLHRLKLLXLGHNNFSGLIPQSVSNLSMLEHLXFSYNFFKGTIPPVIGQLRQLRILDIRKNKLSGIIPPTVSNLSSLEQIHLSYNSLXGEIPKGIGDLTQLRFVNLQYNMLFGNVSSTMFNNSLLQYIGLGFNNLSGDLPSNICQGLPNLRLLYPYSNDITGEMPTIWRHCKELEDLELSFNSFDQGRVLDDIGNLTKLQYLYLSTDNLEGEIPFSLFNISSLRYINLDRNNFNGSLSHEMCRQLPQLEMFILQFNQFEESIPRSIGNCTSLNMLILQDNFFTGSIPMDIGHLSELETLQLGNNSLSGPIPSKLFNISALTYLHLELNHLLGTLPSNMGYGLPNLQELHMYGNKLVGKIPNSISNASMLVKIDLSVNEFSGIVPNAFGDLRFLESLIIGGNNLTTDDSYEFNFFTSLTSCKYLAYLEVSQNGLLSKLPKSIGNLSLLYFWANSCGIDGNIPVEIGNMSNLIRLSLSRNDINGLVPATIKGLQKLQHLNLAYNGLQGSIVDELCEVRSLSELYLTNNKLFGVLPTCLGNMTSLRKVYIGSNRLTSGIPSSFWSLKDILVLRALVLLDLSGNQISSNIPTTINFLKTLQTLSLSHNKLHGSIPTSLGEMVSLSFLDLSQNLLTGVIPKSLESLPYLKYINFSYNQLQGEIPDGGLFKNFTAQSFMHNEALCGNPRLQVPPCGKQAGRRSMTKMLLIKIILPIIVSIILVVACIILLQHKRKKVENPLQRVLSTLGVQRRISYYELVQATNRFNDSNLIGRGSFGSVYQGMLSSGKNVAIKVIDLNLEATSRSFGGECNAMRNLRHRNLVKIISSCSNVDFKSIVMDFMSNGSLDKWLYSDNCCLDFLQRLNVMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDENMVAHVSDFGIAKFLDEGQSKTHTETLATLGYIAPEYGSKGIISIKGDFVDSNLAQQHGKQIDDILTHISSILGLSLSCCVDSPEARISMADVTRSLIKIKTLFTRM

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00071	151983	159159	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000071s00005253.1	PF13855.1	LRR_8	88	147	1.30E-09
Glyur000071s00005253.1	PF13855.1	LRR_8	331	391	1.40E-06
Glyur000071s00005253.1	PF13855.1	LRR_8	501	540	1.00E-06
Glyur000071s00005253.1	PF13855.1	LRR_8	553	601	1.20E-07
Glyur000071s00005253.1	PF00560.28	LRR_1	608	624	1.1
Glyur000071s00005253.1	PF00560.28	LRR_1	632	651	0.38
Glyur000071s00005253.1	PF13855.1	LRR_8	655	703	3.70E-07
Glyur000071s00005253.1	PF00069.20	Pkinase	799	966	2.20E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.012
SRR1783600	control	0.035
SRR1783602	moderate drought stress	0.004
SRR1811619	moderate drought stress	0.024

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.034
DRR006521	Root Winter glycyrrhizin high producing strain	0.343
DRR006522	Root Winter glycyrrhizin high producing strain	0.373
DRR006523	Root Summer glycyrrhizin low producing strain	0.209
DRR006524	Root Summer glycyrrhizin low producing strain	0.213
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.022

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.718
SRR2868004	Drought Stress (root)	5.216
SRR2967015	Control (root)	3.171

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.185
SRR9715740	Leaf	0.026
SRR9715741	Leaf	0.082
SRR9715739	Root	0.027
SRR9715742	Root	0.014
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.769
SRR8749028	MeJA induced 9h	3.613
SRR8749029	MeJA induced 9h	3.760
SRR8749030	Uninduced	5.306
SRR8749031	Uninduced	6.732
SRR8749032	Uninduced	4.449

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.333
SRR8400027	Control - Root	0.304