Gene detail

Gene detail information of Glyur000071s00005247

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45960.1	1.00E-116	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	KHN08475.1	0	GDSL esterase/lipase [Glycine soja]
COG	NP_923900.1	2.00E-17	esterase [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q9FJ40\|GDL86_ARATH	2.00E-143	GDSL esterase/lipase At5g45960 (Precursor)
trEMBL	tr\|I1M1X6\|I1M1X6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G30690.1}

Sequence

Transcript Sequence

>Glyur000071s00005247.1
ATGGGGACCTCTGATACACATTTGTTGCTCTCTTCTATGCAGATTTTCATTCTTTGCTTGTCATGTAATTTTACTGCCAAAGTTGAAGCTTTGAACAACAAAAAGGTCTCTGGCTTTTATGTGTTTGGAGACTCCACGGTAGACCCAGGAAACAATAACTACATACACACACCCTTCAGGAGCAATTTTCCACCATATGGCAGGGATTTTGCCAACCATGTTCCTACAGGGAGGTTCACCAATGGAAAGCTTGTTACTGATTACGTTGCTTCTTATGCTGGTCTGAAGAGAGAGGTTCTTCCACCTTATTTGGACCCAAACCTCACCAATATTGAAGAGCTGATGACAGGAGTTAGTTTTGCCTCTGCTGGTTCTGGCTTTGACCCACTTACACCAACCATCTCTAATGTGATTCCAATACCAAAGCAGTTGGAATATTTCAGAGAATGCAGAAAGAGGCTGGAAGGTGTCCTGGGTAAGCAGAGAACTGAAAATCATTTGAAGAAGGCTGTGTTTTTCATCAGTGCTGGTACCAATGACTTTGTCATTAATTATTTTACTCTACCGTTACGAAGAAATAGCTATACTCCCTTAGCATACCAGCAATTCTTGATCCAACATGTGAAGGAACTCATACAGGATTTGTTAGTAGAAGGTGCACAAAAAATTGCAATAGCTGGAGTACCTCCAATGGGATGTCTACCGNTCATGATCACCTTGAATTCCCCTAATGCCTTTTCACAGCGTGACTGTCTCGACACATATTCCTCTGTCGCTAGAGATTTCAATCTACTCCTTCAACATGAAGTGCACGCAATGCAATTGCAGTTCAATTTGTCTAATAATCCATATGTTAAGATCTATTACGTTGACATATATGGACCCATAGCCGATATGATTCAAGCACATAAAAGATTTGGATTTGACGAGGTTCACAGTGGCTGTTGTGGAAGTGGGTACATTGAAACTACATTTTTGTGTAACAAGATTTCAGATGTATGCCCTGACTCATCCAAGTATTTATTCTGGGATTCAGTTCACCCAACAGAGAAGGCATACCACAACCTCTTCTTGGCTAGCATACCCACCATTGATTTCATTGTCAATAACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00071	124553	129924	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000071s00005247.1	PF00657.17	Lipase_GDSL	40	357	1.80E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.425
SRR1783600	control	5.457
SRR1783602	moderate drought stress	1.152
SRR1811619	moderate drought stress	1.198

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.081
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.134

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.318
SRR2868004	Drought Stress (root)	2.050
SRR2967015	Control (root)	1.947

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.509
SRR9715740	Leaf	0.050
SRR9715741	Leaf	0.088
SRR9715739	Root	1.832
SRR9715742	Root	3.024
SRR9715743	Root	2.026

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.403

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.622
SRR8400027	Control - Root	11.666