Gene detail information of Glyur000071s00005227 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45920.1 | 3.00E-96 | SGNH hydrolase-type esterase superfamily protein |
| NR | KHN08459.1 | 3.61E-152 | GDSL esterase/lipase [Glycine soja] |
| COG | YP_004455532.1 | 1.00E-10 | esterase [Melissococcus plutonius ATCC 35311] |
| Swissprot | tr|Q6NMR9|GDL84_ARATH | 1.00E-120 | GDSL esterase/lipase At5g45920 |
| trEMBL | tr|C6T793|C6T793_SOYBN | 2.00E-151 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU17695.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00071 | 46893 | 50023 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000071s00005227.1 | PF00657.17 | Lipase_GDSL | 6 | 208 | 6.10E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.473 |
| SRR1783600 | control | 1.515 |
| SRR1783602 | moderate drought stress | 1.395 |
| SRR1811619 | moderate drought stress | 1.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.772 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.763 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.264 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.257 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.618 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.626 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.750 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.519 |
| SRR2868004 | Drought Stress (root) | 31.578 |
| SRR2967015 | Control (root) | 28.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.321 |
| SRR9715740 | Leaf | 12.459 |
| SRR9715741 | Leaf | 10.581 |
| SRR9715739 | Root | 3.556 |
| SRR9715742 | Root | 3.579 |
| SRR9715743 | Root | 4.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.267 |
| SRR8749028 | MeJA induced 9h | 0.812 |
| SRR8749029 | MeJA induced 9h | 0.849 |
| SRR8749030 | Uninduced | 0.483 |
| SRR8749031 | Uninduced | 0.056 |
| SRR8749032 | Uninduced | 0.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.064 |
| SRR8400027 | Control - Root | 10.843 |