Gene detail information of Glyur000071s00005225 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G28690.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004485875.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|Q1PFQ9|PPR62_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g28690, mitochondrial (Precursor) |
| trEMBL | tr|I1M1W2|I1M1W2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G30520.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00071 | 37496 | 39076 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000071s00005225.1 | PF01535.15 | PPR | 105 | 133 | 0.0019 |
| Glyur000071s00005225.1 | PF01535.15 | PPR | 178 | 201 | 0.061 |
| Glyur000071s00005225.1 | PF01535.15 | PPR | 211 | 233 | 0.26 |
| Glyur000071s00005225.1 | PF13812.1 | PPR_3 | 315 | 341 | 0.00022 |
| Glyur000071s00005225.1 | PF01535.15 | PPR | 342 | 368 | 1.40E-09 |
| Glyur000071s00005225.1 | PF01535.15 | PPR | 378 | 405 | 0.0059 |
| Glyur000071s00005225.1 | PF13812.1 | PPR_3 | 413 | 439 | 0.33 |
| Glyur000071s00005225.1 | PF13812.1 | PPR_3 | 482 | 511 | 0.55 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.216 |
| SRR1783600 | control | 1.229 |
| SRR1783602 | moderate drought stress | 0.978 |
| SRR1811619 | moderate drought stress | 0.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.831 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.767 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.410 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.434 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.948 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.038 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.979 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.675 |
| SRR2868004 | Drought Stress (root) | 1.570 |
| SRR2967015 | Control (root) | 1.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.105 |
| SRR9715740 | Leaf | 0.377 |
| SRR9715741 | Leaf | 3.153 |
| SRR9715739 | Root | 0.440 |
| SRR9715742 | Root | 0.799 |
| SRR9715743 | Root | 0.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.325 |
| SRR8749028 | MeJA induced 9h | 51.000 |
| SRR8749029 | MeJA induced 9h | 11.714 |
| SRR8749030 | Uninduced | 12.881 |
| SRR8749031 | Uninduced | 32.096 |
| SRR8749032 | Uninduced | 11.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.053 |
| SRR8400027 | Control - Root | 1.041 |