Gene detail

Gene detail information of Glyur000071s00005220.4

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G28590.1	2.00E-103	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	XP_006415636.1	0	hypothetical protein EUTSA_v10006895mg [Eutrema salsugineum]
COG	YP_436892.1	2.00E-10	phospholipase/lecithinase/hemolysin [Hahella chejuensis KCTC 2396]
Swissprot	tr\|Q8RXT9\|GDL8_ARATH	3.00E-122	GDSL esterase/lipase At1g28590 (Precursor)
trEMBL	tr\|V4KRU4\|V4KRU4_EUTSA	0	Uncharacterized protein {ECO:0000313\|EMBL:ESQ33989.1}

Sequence

Transcript Sequence

>Glyur000071s00005220.4
ATGGGTATACTAATTAACATCATGAATATCTTCATTCTCTTTAGCATCATTTGTGCATGCAACATCCTTGGAAATGCTGTTTCGAAAGCCAATCCTCTCCCGTATGAAGCTATCTTCAACTTTGGTGACTCTATAAGTGACACTGGAAATGCTGCGTTTGGTCACCAACCTATGCCTAGCAATAGTCCTTATGGCTCAACATACTTCAAACATCCAGCAGGACGTTTGTCAAATGGACGACTCATCATAGATTTCATAGCTGAGGCATATGGGTTGCCATTTTTGCCGGCCTATCTGGAACTCACNAAGAGCCAAGACATCAAGAAAGGAGTAAATTTTGCAGTTGCTGCTGCCACTGCACTTGATTTTGAGTATTTCATTCGAAGTGGAGTCGATGCACCAGGGTCGCGAAAATCATTGAGCATTCAACTTGGTTGGTTTAAGAAGCTCAAGCCCTCCCTTTGTAGCAGCAAAGAAGAGTGCGGCAGCTACTTCAAAAACGCTTTGTTTCTAGTGGGAGAGATTGGTGGGAATGATATTGCGGCACACATGTTATATAGAAATGTTACACAACTTCGAGAAGCATTAATCGAAGAAGGAGCCGTAGAGCTAGTGGTGCCAGGGAACTTTCCAATGGGGTGCAATGCTGGAGTTTTGACAAGGATCAATAGTAGTAAGAAAGAAGANTATGATCAATTTGGGTGCTTGATAGCTTTCAATACTTTGATCGAGAACTTTAATGGGCAGCTCAAAAATGCAATAGAGACACTAAGGAAGAAGCACCCTCAAGCTAAGATAACATATTTTGACTACTACAATGATGCCAAACGTTTATATCAAGCACCACAAGATTATGGCTTTGATAAGAATGAGAGTTTCAAAGCATGTTGTGGAGCACATGGACCTTACAANGTCGATGAAAGCATGGTGTGTGGAAGTAAAAAATCAACGGTTTGCTCTGACCCTTCAAAACATATAAACTGGGACGGAGCTCATTTTACCGAAGCAGCTTATAAGCTAATAGCAAAGGGACTAGTTGAGGGCCCCTTTGCAGATCCTCCTCTCAAATCCCCTCCTTTTAAGATAGCTTAGAATTCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00071	14042	26484	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K21026	AAE	EC:3.1.1.80	Indole alkaloid biosynthesis	map00901
			Indole alkaloid biosynthesis	map00901
			Indole alkaloid biosynthesis	map00901
			Indole alkaloid biosynthesis	map00901

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000071s00005220.4	PF00657.17	Lipase_GDSL	38	343	8.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.782
SRR1783600	control	6.866
SRR1783602	moderate drought stress	7.880
SRR1811619	moderate drought stress	10.196

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.806
DRR006520	Root Summer glycyrrhizin high producing strain	5.347
DRR006521	Root Winter glycyrrhizin high producing strain	0.647
DRR006522	Root Winter glycyrrhizin high producing strain	0.692
DRR006523	Root Summer glycyrrhizin low producing strain	1.655
DRR006524	Root Summer glycyrrhizin low producing strain	1.717
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.995
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.300

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.907
SRR2868004	Drought Stress (root)	13.145
SRR2967015	Control (root)	14.334

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.271
SRR9715740	Leaf	10.767
SRR9715741	Leaf	15.026
SRR9715739	Root	5.414
SRR9715742	Root	4.950
SRR9715743	Root	5.145

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.918
SRR8749028	MeJA induced 9h	24.109
SRR8749029	MeJA induced 9h	20.121
SRR8749030	Uninduced	9.993
SRR8749031	Uninduced	32.363
SRR8749032	Uninduced	44.959

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.743
SRR8400027	Control - Root	9.138