Gene detail

Gene detail information of Glyur000071s00005219

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18550.1	6.00E-139	alpha/beta-Hydrolases superfamily protein
NR	XP_003547164.1	0	PREDICTED: phospholipase A1-IIgamma-like [Glycine max]
COG	YP_003889645.1	1.00E-12	lipase class 3 [Cyanothece sp. PCC 7822]
Swissprot	tr\|O49523\|DSEL_ARATH	1.00E-177	Phospholipase A1-IIgamma
trEMBL	tr\|I1MER2\|I1MER2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G08780.1}

Sequence

Transcript Sequence

>Glyur000071s00005219.1
AGGTGGCCGGGCCTCTATCCTTTCAAAAGCGACAGAATATCAGAATTCAGACATTAATTAGGAGTAATTAATTAGGGGGGGATTTATGAAGGCCGAGGTCTCAGCTGACTCTGCGGTTCCATATAGTATAAAACATGCAGTAGCAGTCCTGATCATAAGGTGGTTCGGTTTGAATTTGAAGAAGAAGAAGAACAACAAGAAAATGGACAACAACAGCATAGCTCACAAATGGCGACAACTCGGCGGCGAAAACCACTGGAAGGGTCTTCTAGACCCTCTCGACCTCGACCTGCGCCGTTACTTGATCCACTACGGCGAAATGGCACAATCGACATACGATGCTTTCAACACAGAGAAAGCATCAAAGTATGCGGGTAGCAGCAGGTACGCAAAGAGGGATTTTTTCTCCAAGGTGGGTTTGGAATATGGGAACCCCTTCAAGTACTCTGTTACCAAGTTCCTGTACGCAACTTCAGAGATCGATGTCCCTGAAGCGTTTATCATAAAGTCATTGTCTAGGGAGGCTTGGAGCAGGGAATCGAATTGGATTGGGTATGTTGCTGTGGCCACTGATGAAGGGAAAGCCGTGTTGGGGAGAAGGGACATTGTTATTGCCTGGAGAGGAACGGTTCAGACTTTGGAATGGGTTAACGATTTTCAGTTCATTTTGGTCCCTGCACCCAAAATCTTTGGTAACGACACTGATTCTTCTAATCCTAAAGTACACCAGGGCTGGTACTCCATTTACACTTCTGATGACCCTAGTTCTCCCTTCAACAAGACCAGTGCCCAAGACCAGGTCCTAAGTGAGGTGAGAAGGCTGGTGGAGAAATACAAGAATGAAGAAATAAGCATAACTATAACTGGGCACAGTTTAGGTGCTGCACTTGCAACTCTCAGTGCAGTGGACATTGTCANGAATGGGTATAACAAGCCAATGAATGATCCGTCAGTAAAGGCCTGTCCAGTCACAACCATTNCATTTGCCTGCCCCAGAGTTGGTGAGGACAACTTTAAGAAGCTTNTTTCTAGGCTCAAAGATCTATCAGCCATACGCATAAAAAATGAGTTAGACATTGTTCCAAACTATCCCTTGATTGAGTATTCGGATGTGGGTGAGGAGTTGAAGATTGACAACAGAAAATCAATGTACTTGAAGAGTCCTGGGAATCCTTCCACTTGGCATAACTTGGAGGTTTACNTGCATGGAGTAGCAGGGACGCAGGGGAGTAGAGGGGGATTCAAATTGGAGGTTAAACGCGATGTTGCGCTTGCGAACAAGACCTCGGATTCTCTGAGAGATGAATACCTTGTACCAGTGTCATGGAGGGTCGTCCAGAATAAGGGAATGGTTCAATTACCAGATGGTTCATGGAAGCTAATGGATCATGAGGATGATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00071	10735	12790	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000071s00005219.1	PF01764.20	Lipase_3	175	338	6.60E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.714
SRR1783600	control	0.735
SRR1783602	moderate drought stress	1.223
SRR1811619	moderate drought stress	0.959

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.951
DRR006520	Root Summer glycyrrhizin high producing strain	0.960
DRR006521	Root Winter glycyrrhizin high producing strain	0.159
DRR006522	Root Winter glycyrrhizin high producing strain	0.155
DRR006523	Root Summer glycyrrhizin low producing strain	2.071
DRR006524	Root Summer glycyrrhizin low producing strain	1.855
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.895
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.020

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.923
SRR2868004	Drought Stress (root)	10.315
SRR2967015	Control (root)	15.670

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.611
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.394
SRR9715739	Root	0.521
SRR9715742	Root	3.053
SRR9715743	Root	1.902

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.318
SRR8749028	MeJA induced 9h	0.905
SRR8749029	MeJA induced 9h	0.705
SRR8749030	Uninduced	0.012
SRR8749031	Uninduced	0.223
SRR8749032	Uninduced	0.061

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.093
SRR8400027	Control - Root	9.615