Gene detail information of Glyur000071s00005218 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18570.1 | 4.00E-114 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_007148061.1 | 0 | hypothetical protein PHAVU_006G177200g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LI74|CHUP1_ARATH | 4.00E-101 | Protein CHUP1, chloroplastic |
| trEMBL | tr|V7BSN6|V7BSN6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW20055.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00071 | 250 | 3605 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.012 |
| SRR1783600 | control | 0.992 |
| SRR1783602 | moderate drought stress | 0.487 |
| SRR1811619 | moderate drought stress | 0.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.505 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.340 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.736 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.774 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.532 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.238 |
| SRR2868004 | Drought Stress (root) | 4.862 |
| SRR2967015 | Control (root) | 5.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.595 |
| SRR9715740 | Leaf | 0.138 |
| SRR9715741 | Leaf | 1.095 |
| SRR9715739 | Root | 1.461 |
| SRR9715742 | Root | 1.377 |
| SRR9715743 | Root | 1.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.566 |
| SRR8749028 | MeJA induced 9h | 1.104 |
| SRR8749029 | MeJA induced 9h | 1.196 |
| SRR8749030 | Uninduced | 0.283 |
| SRR8749031 | Uninduced | 0.033 |
| SRR8749032 | Uninduced | 0.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.038 |
| SRR8400027 | Control - Root | 6.498 |