Gene detail information of Glyur000070s00008088 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67740.1 | 1.00E-23 | photosystem II BY |
| NR | XP_002285325.1 | 1.07E-83 | PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Vitis vinifera] |
| Swissprot | tr|P80470|PSBY_SPIOL | 1.00E-57 | Photosystem II protein psbY-2, chloroplastic (Precursor) |
| trEMBL | tr|F6GVJ9|F6GVJ9_VITVI | 4.00E-84 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB44018.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00070 | 379997 | 380614 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000070s00008088.1 | PF06298.6 | PsbY | 98 | 130 | 2.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.344 |
| SRR1783600 | control | 1.104 |
| SRR1783602 | moderate drought stress | 2.362 |
| SRR1811619 | moderate drought stress | 2.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.307 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.109 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.018 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.451 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.380 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.619 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1989.867 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1940.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.773 |
| SRR2868004 | Drought Stress (root) | 42.927 |
| SRR2967015 | Control (root) | 15.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1186.234 |
| SRR9715740 | Leaf | 1066.990 |
| SRR9715741 | Leaf | 733.658 |
| SRR9715739 | Root | 2.288 |
| SRR9715742 | Root | 6.897 |
| SRR9715743 | Root | 4.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.510 |
| SRR8749028 | MeJA induced 9h | 20.955 |
| SRR8749029 | MeJA induced 9h | 11.841 |
| SRR8749030 | Uninduced | 10.232 |
| SRR8749031 | Uninduced | 2.456 |
| SRR8749032 | Uninduced | 7.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.299 |
| SRR8400027 | Control - Root | 23.894 |