Gene detail

Gene detail information of Glyur000070s00008078

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34650.1	9.00E-150	Protein kinase superfamily protein
NR	XP_004504155.1	0	PREDICTED: protein kinase PINOID-like [Cicer arietinum]
COG	YP_003302268.1	4.00E-20	serine/threonine protein kinase [Thermomonospora curvata DSM 43183]
Swissprot	tr\|O64682\|PID_ARATH	0	Protein kinase PINOID
trEMBL	tr\|G7L9M4\|G7L9M4_MEDTR	0	Serine/Threonine kinase family protein {ECO:0000313\|EMBL:AET04498.1}

Sequence

Transcript Sequence

>Glyur000070s00008078.1
ATGTTAGAGAGTGGTGGTGGTGGTGGTGGTGGTGCACGTGATTCTGAGGTGAGTTTGGAGACCGTGAATTCGACACAGCGAAGCTCGATGAGTAGCGAAAGCATTTGCAGCACGAGTTTCGGCCGTCTTTCCTTCGAGCTCCCACCGGCCTCGCCGGAGAGTCTCTCCCTCAAGCCACACCGCTCCTCCGACTCCGCCTACTCCGCCATCCGCTCCGCCACGTTCCGCCGCAAGTCCGCCCTCACCTTCCGCGACTTCCACCTCCTCCGTCGCATCGGCGCCGGCGACATCGGCACCGTCTACCTCTGCCGCCTCCGCAGCTCCAATGGGGGCCAATTCGAAAACGAAGTAGAAGAAGAAGAGGCGAGATGCGCCTTGTACGCGATGAAGGTGGTGGACAAAGACGCCGTGGCACTGAAGAAGAAGGCGCAGAGAGCGGAAATGGAGAGAAAGATCCTCAAGATGCTCGACCACCCTTTCCTCCCTACACTCTACGCTGAGTTCGAGGCCTCTCATTTCTCCTGCATTGTCATGGAGTTTTGTTCCGGTGGAGACTTGCANTCCCTACGCCACAAGCACCCTCACAACCGTTTCCCTCTTTCTTCAGCTAGATTTTATGCGGCGGAGGTACTGGTGGCGTTGGAGTACCTTCACATGCTGGGAATCATTTACAGGGATTTAAAGCCAGAGAACGTGTTGGTCAGATCNGACGGTCACATCATGCTTTCTGATTTCGATCTTTCCCTTTGCTCAGATGCAATCCCTGCCGTTGAGTCACCATCCGATTGCTTACTACAAGATGCCGNGTTTCCACGGTCGCGTTCCTTTCCCACTCCTTTCTCGTGCCTTTCGAATCGGTTGATGTTGTTCCGGTCCCGCAAGATACAAACACTTCAACNGAACCGGCTCTTCGTGGCCGAACCGGTTTCTGCCCGGTCATGCTCATTTGTTGGAACACACGAGTACGTCTCGCCGGAGGTTGCCGCCGGTCACTCCCACGGCAACGCCGTGGACTGGTGGTCGTTCGGGATATTCATCTACGAACTCATCTACGGTCGTACCCCGTTTGCGGCCCCATCCAACGAGGCTACGCTGCGGAGCATCCTAAAAAAGCCGCTGGCCTTTCCCACGGCCACGCCCTCGAGCTCGCTTGAGCTCCACGCGCGGGACCTGATATCCGGGTTGCTGAAGAAGGACCCGGCGCAGCGTCTCGGGTCGAAGCGAGGTGCCGCTGACGTCAAGAAGCACCCGTTCTTCAAAGNGCTCAACTTGGCGCTGATTCGCATGATGACGCCGCCCGAAGTTCCGGGCTCGAGAAGGCACAAAACGACGCCGTCGTGCCATGGGAAGGGTAGCNGCAACAGTAGTAGTAATAGTAAACAGCAGTCGACGGCGTCGTTTGATTTTTACTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00070	324161	325675	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000070s00008078.1	PF00069.20	Pkinase	86	250	4.70E-33
Glyur000070s00008078.1	PF00069.20	Pkinase	312	419	1.90E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.886
SRR1783600	control	5.863
SRR1783602	moderate drought stress	4.631
SRR1811619	moderate drought stress	4.851

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.017
DRR006520	Root Summer glycyrrhizin high producing strain	3.978
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.108
DRR006524	Root Summer glycyrrhizin low producing strain	2.087
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.786
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.735

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.369
SRR2868004	Drought Stress (root)	2.827
SRR2967015	Control (root)	1.590

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.455
SRR9715740	Leaf	0.821
SRR9715741	Leaf	0.633
SRR9715739	Root	5.209
SRR9715742	Root	6.372
SRR9715743	Root	4.275

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.542
SRR8749028	MeJA induced 9h	2.208
SRR8749029	MeJA induced 9h	3.194
SRR8749030	Uninduced	0.157
SRR8749031	Uninduced	0.054
SRR8749032	Uninduced	0.593

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.840
SRR8400027	Control - Root	4.331