Gene detail

Gene detail information of Glyur000070s00008075.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G05420.2	damaged DNA binding protein 1A
NR	XP_003525024.1	PREDICTED: DNA damage-binding protein 1-like isoform 1 [Glycine max]
Swissprot	tr\|Q6QNU4\|DDB1_SOLLC	DNA damage-binding protein 1
trEMBL	tr\|I1K4D0\|I1K4D0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G30530.1}

Sequence

Transcript Sequence

>Glyur000070s00008075.1
ATGAGTATATGGAACTACGTGGTGACAGCTCACAAACCCACCAACGTTACTCACTCCTGCGTCGGCAACTTCACTAGCCCTCAGGACCTCAATCTCATCATCGCGAAATGCACTCGCATCGAGATTCACTTGCTTTCTCCTCAGGGCTTGCAGCCTATGTTGGACGTGCCGATATATGGACGAATTGCCACACTTGAACTCTTTCGCCCTCACGGCGAAGCACAAGATTATTTGTTTATTGCGACTGAAAGATACAAATTCTGTGTTCTTCAATGGGATACTGAGACTTCTGAGCTCGTTACACGGGCAATGGGGGATGTTTCTGATCGTATAGGACGACCCACCGATAATGGTCAGTCTATAGGATCAGATGAAATTGCTCAGTTCATTTCAGCAGTTATCCCTCTTCCTTTCTTTATGCAGATTGGCATTATTGATCCTGATTGTAGGTTGATTGGACTCCACTTGTATGATGGCTTGTTTAAAGTATGTAACTTTTTCTCATTCTCTATCCTGCTTGAGGAGCTCCAAGTTTTGGATATCAAATTTCTTTATGGTTGTTCAAAGCCAACTATTGTGGTTCTTTACCAGGATAACAAAGACGCACGTCATGTTAAAACGTATGAGGTTGCTCTCAAGGATAAAGATTTTGTCGAGGGTCCATGGTCTCAGAACAATCTTGATAATGGGGCTGATTTATTGATACCGGTTCCCCCACCTCTTTGTGGTGTGCTCATTATTGGAGAAGAAACCATAGTATATTGCAGTGCCAATGCTTTTAAAGCTATCCCAATCAGACCTTCAATTACAAAAGCCTATGGAAGAGTTGATCCTGATGGTTCTAGATATTTACTTGGTGACCATACAGGGTTGCTTAGTCTACTTGTAATAACCCATGAGAAAGAAAAGTATGCATCAGTAGAACTTCAAGGTATCAAAGGAATGTGGTCACTAAGATCCTCTACAGATGATCCTTTTGACACTTTCCTGGTTGTAAGTTTTATAAGTGAAACGAGAATATTAGCAATGAATCTTGAGGATGAGCTGGAAGAAACTGAGATTGAGGGATTCTGCTCTCAAGTACAGACATTATTTTGCCATGACGCAGTTCACAATCAACTTGTACAAGTCACTTCGAGCTCTGTAAGACTGGTCAGTTCCACGACTAGAGAGCTCCGGAATGAATGGCATGCACCATCAGGCTATTCAGTAAATGTAGCTACTGCCAATGCTACCCAGGTTTTGTTGGCCACAGGAGGTGGGCATTTAGTTTACCTCGAAATTGGAGATGGCATCCTACAGGAAGTAAAGCATGCCCAACTGGAGTATGAGATCTCATGCCTAGACATAAATCCCATTGGTGAAAACCCCAATCAGAGTCATCTAGCAGCAGTTGGAATGTGGACTGACATAAGTGTTAGAATTTTTTCTCTTCCTGACCTTAATCTCATCACAAAGGAGCATTTAGGAGGAGAGATAATACCTCGATCTGTTCTTCTTTGTGCGTTTGAAGGGATATCTTACTTGCTATGTGCCCTTGGTGATGGCCATCTCTTAAACTTTATGTTGAACACAAGTACTGGTGAGCTATCAGATAGGAAAAAGGTCTCTCTTGGGACACAACCTATTACGCTGCGAACTTTCTCATCCAAGAATACTACCCATGTATTTGCTGCATCTGATCGGCCAACTGTGATTTATAGTAGTAACAAAAAATTACTCTATAGTAATGTAAATCTGAAGGAAGTGAGTCACATGTGCCCTTTCAACTCTGCTGCTTTTCCAGACAGTTTGGCAATTGCAAAAGAAGGTGAGCTTACTATTGGCACCATTGATGACATACAAAAACTTCATATCCGCTCTATTCCACTGGGGGAGCATGCACGACGAATCTGCCATCAGGAGCAATCCAGGACTTTTGCTATTTGTAGTTTGAAATACAACCCAACAAGTGCTGAAGAATCTGAAATGCACTTTGTCCGCCTGCTGGATGACCAGACTTTTGAGTTCATATCAACTTATCCACTTGACACTTATGAGTATGGTTGCTTTATAATTAGCTGCTCCTTCTCAGATGATAATAACGTGTATTACTGTGTTGGAACTGCATATGTATTACCTGAGGAAAATGAACCGACCAAAGGAAGAATTCTTGTCTTTACTGTTGAAGATGGAAAGCTACAGCTAATTGCTGAGAAGGAGACAAAAGGAGCTGTTTACTGCTTGAATGCGTTTAATGGTAAATTGCTTGCTGCTATTAATCAAAAAATTCAGCTGTACAAGTGGGTGCTCCGGGATGATGGCACTCATGAATTACAATCTGAATGTGGACATCATGGACACATCCTAGCTTTGTATGTGCAAACTCGAGGAGATTTCATCGTAGTTGGTGATCTGATGAAGTCAATTTCCTTGTTAATCTATAAGCATGAAGAAGGTGCAATTGAGGAGAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCTGTTGAAATCCTTGATGATGACATATACCTTGGTGCAGAAAATAGTTTCAATCTCTTCACTGTTAGGAAAAATAGCGAAGGCGCCACTGATGAAGAACGGGCTCGTCTTGAAGTGGTTGGTGAGTATCACCTTGGAGAATTTGTCAATCGGTTCCGGCATGGCTCCCTTGTTATGCGTTTGCCAGATTCTGATGTGGGCCAGATTCCAACTGTTATTTTTGGCACCATTAATGGCGTTATTGGGGTAATTGCATCTCTTCCTCATGAGCAATATGTTTTTCTGGAGAAGCTTCAGACAAACTTGAGAAAGGTGATTAAGGGCGTTGGAGGACTCAGCCATGAGCAGTGGAGGTCATTTAACAATGAGAAGAAAACTGTAGAAGCCAGAAACTTTTTGGATGGAGATTTGATTGAGTCATTTCTTGATCTAAACCGCAATAAGATGGATGAGATTTCCAAGGCAATGGATGTTTCAGTAGAGGAGTTATGCAAGAGAGTAGAGGAGTTGACTAGGTTGCACTGAGTTTATCCTCATTTGGAGTGTCTTTTGTTTTTTTATTCTTTACTCTCCTTAAACTTTATTTTTCCCTTTTTTTTTTGTGTTGGGGGTTAAAATAACATTGTATGTTTTATCCTTTCCCNCCCCGGCTTTTGCCTTAAAAGTTATGCCGAGACAAGGGAATGCTTTGCATTTGACAATATATGGATCACAAATGGTGTCTGTTAATATGTATGTCATGTTCAAAGGCATAACAGGGCTTCCCAATTCCATTTTAGACTCTTGACCATTTTCTTGATATTTGCTTTTAAGTCGTCAGTT

Protein Sequence

>Glyur000070s00008075.1
MSIWNYVVTAHKPTNVTHSCVGNFTSPQDLNLIIAKCTRIEIHLLSPQGLQPMLDVPIYGRIATLELFRPHGEAQDYLFIATERYKFCVLQWDTETSELVTRAMGDVSDRIGRPTDNGQSIGSDEIAQFISAVIPLPFFMQIGIIDPDCRLIGLHLYDGLFKVCNFFSFSILLEELQVLDIKFLYGCSKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIRPSITKAYGRVDPDGSRYLLGDHTGLLSLLVITHEKEKYASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQVQTLFCHDAVHNQLVQVTSSSVRLVSSTTRELRNEWHAPSGYSVNVATANATQVLLATGGGHLVYLEIGDGILQEVKHAQLEYEISCLDINPIGENPNQSHLAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFMLNTSTGELSDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKYNPTSAEESEMHFVRLLDDQTFEFISTYPLDTYEYGCFIISCSFSDDNNVYYCVGTAYVLPEENEPTKGRILVFTVEDGKLQLIAEKETKGAVYCLNAFNGKLLAAINQKIQLYKWVLRDDGTHELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENSFNLFTVRKNSEGATDEERARLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTINGVIGVIASLPHEQYVFLEKLQTNLRKVIKGVGGLSHEQWRSFNNEKKTVEARNFLDGDLIESFLDLNRNKMDEISKAMDVSVEELCKRVEELTRLH

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00070	283140	292096	-

Gene family

Gene family	subfamily
Ubiquitin Family	DDB1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000070s00008075.1	PF10433.4	MMS1_N	76	302	5.40E-21
Glyur000070s00008075.1	PF10433.4	MMS1_N	305	453	1.90E-27
Glyur000070s00008075.1	PF03178.10	CPSF_A	658	971	9.10E-85

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.617
SRR1783600	control	41.871
SRR1783602	moderate drought stress	52.274
SRR1811619	moderate drought stress	52.360

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	50.492
DRR006520	Root Summer glycyrrhizin high producing strain	49.949
DRR006521	Root Winter glycyrrhizin high producing strain	50.440
DRR006522	Root Winter glycyrrhizin high producing strain	48.744
DRR006523	Root Summer glycyrrhizin low producing strain	43.599
DRR006524	Root Summer glycyrrhizin low producing strain	43.080
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.697
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.497

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.971
SRR2868004	Drought Stress (root)	50.715
SRR2967015	Control (root)	50.792

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.913
SRR9715740	Leaf	30.726
SRR9715741	Leaf	27.853
SRR9715739	Root	10.689
SRR9715742	Root	44.866
SRR9715743	Root	36.443

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	54.915
SRR8749028	MeJA induced 9h	33.642
SRR8749029	MeJA induced 9h	35.481
SRR8749030	Uninduced	13.698
SRR8749031	Uninduced	14.118
SRR8749032	Uninduced	14.793

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.765
SRR8400027	Control - Root	52.648