Gene detail

Gene detail information of Glyur000070s00008072

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21120.1	0	amino acid transporter 1
NR	XP_003531311.1	0	PREDICTED: cationic amino acid transporter 1-like isoform X1 [Glycine max]
COG	YP_003342184.1	1.00E-79	amino acid transporter [Streptosporangium roseum DSM 43021]
Swissprot	tr\|Q84MA5\|CAAT1_ARATH	0	Cationic amino acid transporter 1
trEMBL	tr\|K7L6C1\|K7L6C1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G13640.3}

Sequence

Transcript Sequence

>Glyur000070s00008072.1
ATGGCAGTTGGCGGTGACGTCGTGGAGGGCGGAGGAGTACGGAGGAGGGGATGCACGTTCCGTAGAAACGACTTCTTCCCAGAGGAGTCGTTTAAGAGTTGGGGGAACTACGGAAGAGCGGTGATGGAGACGCCGTTTCGGTTGAAGGATCGGGTGTTCACACGATCCAAGGACCACACGGAGCTGGTGGAGATGAAGGCTCGGAGTGGCCACGAGATGAAGAAGACACTCAATTGGTGGGACCTCATGTGGTTCGGCATCGGCGCCGTCATCGGCTCCGGTATATTCGTCCTCACCGGCTTTGAGGCAAGAAACGAAGCTGGCCCCGCCGTCGTGTTGTCCTACGTCGTCTCCGGCGTCTCCGCTCTGTTATCCGTCTTTTGCTACACGGAGTTCGCAGTGGAAATACCTGTTGCAGGTGGTTCATTTGCGTATTTGAGAGTAGAGCTGGGAGACTTTGTGGCCTTCATAGCAGCTGGAAACATCCTCCTCGAGTATGTAATAGGCAGCGCCGCCGTAGCTCGGTCATGGACCTCCTATTTCGCCACCCTATGCAACAAACACCCCGACGACTTTCGCATAATAGTCCACGACATGAACCCCGACTATGGCCATCTCGACCCCATTGCCATTGGGATCCTCATAGTCATAACCATCCTCGCAGTTTGCAGCACCAAAGGCTCCTCCATCTTCAACTACATCGCCTCAGTCTTCCACATGGTCGTCATTGTCTTCATCATAATCGCTGGACTCATCAATGCCAACACCGAAAACTACACCAACTTTGCACCCTTCGGTGCCCGTGGTGTGTTCAAGGCTTCAGCTGTTCTTTTCTTCGCTTACGTGGGTTTTGATGCAGTTTCAACCATGGCTGAGGAGACTAAGAACCCTGCTAAGGACATTCCCATTGGTCTTGTTGGGTCAATGGTGATTACCACCACTGCTTATTGCGTGCTAGCAGTCACACTATGCTTAATGCAGAACTATGAGACCATCGATGTGGATGCACCCTTTTCGGTTGCGTTTAGTGTTGTTGGGTGGGATTGGGCTAAGTACATTGTTGCATTGGGGGCGTTAAAGGGAATGACCACTGTGTTGTTGGTGAGTGTTGTGGGCCAAGCTCGTTACTTGACCCACATTGCACGCACCCACATGATGCCTCCTTGGTTTGCTCACGTTGATGAGCGAACCGGGACACCTATAAATGCCACCATCTCAATGCTCGTAGCTACTGCTGTGATTGCTTTCTTCACAGACCTCGGGATTCTCTCAAGTCTCTTGTCGATTTCCACTCTCTTCATCTTCATGCTTGTCGCGGTGGCGCTTTTGGTGCGCCGCTACTATTCGAGTGGGGTAACCACAAAGCGGAACCAAGTCAATTTCATCGTGTGCCTTGTCCTGATTCTTGGGTCATCTTGTGGAATTTCAGCTTANTGGGCAAACAGTGATGGGTGGGTTGGGTATACAATAGCNGTNCCNTTGTGGCTTTTAGGGACGGNGGGTCTTTGGCTTGGTGTTCCACAGGCTAAAAAGCCAAANCTTTGGGGNGTGCCTTTGGTTCCNTGGCTACCTTCNTTGTCCATTGCCATTAACATATTCCTTCTTGGGTCCATCGATAGAAATTCTTTCATTAGGTTTGCGGTGTGGACTGGGTTTCTCTTGGTGTACTATGTGCTGTTGGGGTTACATGCCTCGTATGACACGGCGAAAGAGTTTGATCATCAGGGCAAAAACAGTACTCCCGAGGAGGTTGACAACAATGACAAGCAGTGGAACAATAATAGGGTGGAAATGGGAGCAGTGGGGCAAGTGTCTAGTACTGCAGCAGTTTCCAATATTAATGATGTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00070	261172	265302	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0003333 amino acid transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015171 amino acid transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000070s00008072.1	PF13520.1	AA_permease_2	77	468	2.90E-48
Glyur000070s00008072.1	PF13906.1	AA_permease_C	515	565	1.40E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.232
SRR1783600	control	2.309
SRR1783602	moderate drought stress	1.439
SRR1811619	moderate drought stress	1.530

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.058
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.118
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.383
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.528

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.987
SRR2868004	Drought Stress (root)	37.652
SRR2967015	Control (root)	54.730

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.369
SRR9715740	Leaf	1.961
SRR9715741	Leaf	14.030
SRR9715739	Root	2.172
SRR9715742	Root	1.882
SRR9715743	Root	2.290

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.516
SRR8749028	MeJA induced 9h	1.335
SRR8749029	MeJA induced 9h	0.821
SRR8749030	Uninduced	0.659
SRR8749031	Uninduced	0.370
SRR8749032	Uninduced	0.364

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.032
SRR8400027	Control - Root	11.659