Gene detail information of Glyur000070s00008069 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G44550.1 | 3.00E-32 | Uncharacterised protein family (UPF0497) |
| NR | NP_001241476.1 | 3.68E-76 | CASP-like protein 1B1 [Glycine max] |
| Swissprot | tr|C6TG62|CSPL9_SOYBN | 2.00E-78 | CASP-like protein 1B1 |
| trEMBL | tr|I1KST6|I1KST6_SOYBN | 7.00E-76 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00070 | 254499 | 255550 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000070s00008069.1 | PF04535.7 | DUF588 | 21 | 160 | 8.80E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 67.993 |
| SRR1783600 | control | 67.524 |
| SRR1783602 | moderate drought stress | 59.844 |
| SRR1811619 | moderate drought stress | 61.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.015 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 256.158 |
| SRR2868004 | Drought Stress (root) | 159.631 |
| SRR2967015 | Control (root) | 139.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.278 |
| SRR9715739 | Root | 51.778 |
| SRR9715742 | Root | 19.877 |
| SRR9715743 | Root | 26.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.057 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 497.811 |
| SRR8400027 | Control - Root | 531.518 |