Gene detail

Gene detail information of Glyur000070s00008058

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34930.1	8.00E-99	disease resistance family protein / LRR family protein
NR	XP_003604806.1	0	Receptor-like protein kinase [Medicago truncatula]
COG	YP_004775215.1	4.00E-31	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9FL28\|FLS2_ARATH	1.00E-66	LRR receptor-like serine/threonine-protein kinase FLS2 (Precursor)
trEMBL	tr\|G7JR90\|G7JR90_MEDTR	0	Leucine-rich receptor-like kinase family protein {ECO:0000313\|EMBL:AES87003.1}

Sequence

Transcript Sequence

>Glyur000070s00008058.1
ATGGCAATGAATACCAGATTCCTTCAACTTCTAGCAGAATTTATTGCCATTTTATACCTTTTAATGCAGGGACATGTGCTATGCGATGGAGGGTTCAACATAACCAGTGAAGCAGAGGCTCTTCTTAAGTTCAAGGAAGGGTTGAAAGACCCTTCAAATCGTTTATCTTCTTGGGCACCTGGAAAGGATCATTGCCAGTGGAAAGGAGTAGGATGCAACACATCCACAGGTCATGTTATCTCCCTTAATCTCCATTCTGCAAATTCGTTAGATAAACTGCAGGGTGAGTTAAGTTCATCCTTGCTCGGATTGCCACATTTAAGTTCTTTGACCCTAAGTGGCAATGATTTCATGCAATCCGAAGTGCCTGCTTTTCTAGGTACCATGAAAAATATAAAACATCTTGACCTATCAAGTGCCAATTTTAAGGGGAGCCTCCCTGATACTCTTGGAAAACTCTCTCTACTTGAGTCACTTGATCTGAGTGGCAATGGCAATGATTTATTTGTCAATAATCTAGAATGGCTTCATGGTCTTTCTTCCATGAAAACTCTCGATCTAAGTGGTGTTGGTCTTGGCAGTTGTGCAGAAGATTGGTTTCATGGCACAAGCATGATGCCTTCTCTTGCTACATTGCGTTTATCATGTTGCCAACTTCACAAACTGCCTAAATCTCCACCTGAAGGGAATTTCAATTCTCTTATAACTCTTGATCTGTCTTTCAATAATTTCAGTGATACCATACCTGATTGGTTGTTTGAAAATTGCCATCACCTCCAACATCTTAATCTATCACACAGTGGTCTCATAGGTTCAATACCAGACTCCATTGACAGGTTGTCGTCTCTTGTAGTACTTGATCTATCCTACAATGAACTCACTGGTTCAATGCCATCAACATTGGGCCAAACCCAAAATAGAGCAACAACAACTTCATGTTTGAAAGAGCTGCATCTTTCAAACAATCAGCTGAACGGGTCACAGCTGGAAAGAAGCCTTCCCCCGCTTTCAAAACTGGCTGTGTTGGATTTGGCTCAGAACAACTTGGAGGGCAATATCACTGATGCTCATCTAGCTAACTTCAGCAGCCTCAGGGTGTTGGACCTATCTCAGAATAAGCTCCTAACTTTGAATATAAGCAAAAGCTGGGTCCCCCCTTTTCAACTTGAAACCATAGGTTTGGCGCATTGTCGGTTGGGCCCTCAATTTCCAAAGTGGATTCAAACGCAGAAGAACTTCTCCCATATTGATATATCAAATGCTAGTATCTCTGATACTGTGCCAGGATGGTTTTGGGATTTGTCACCCGGCGTTGAGTACATGAACCTCTCTACCAACGAGCTGAGAAGATGTGGGCATGATTTTTCACAAAAACTCAAACTTGACACACTTGATTGGAGCAACAATAATTTCTCATGTCCCCTTCCTCGTTTGCCTCCTACCACGAGGACCTTGGATCTGGCTGGTAACTCATTTTATGGAACTATCTCACACGTATGTGAGATGTTGGGTGTCAACAGCTCATTGGAGACTCTCGACTTATCTTCAAATAATTTGTCAGGAGTCATCCCAGACTGTTGGACGCATGGGAGAAAGATGATCTTTCTTGACCTGGCAGAAAACCATTTTGAAGGCTCAATTCCAGATTCCCTCGGTAGCCTCACGGTTCTCCACACGTTGATTATGGACAGAAATAATCTTTCTGGAAAAATTCCAGACACTCTGAAAGATTGCAAAGGGCTGGTCATTTTAAGTTTGGGGTCGAATCGATTTCGGGGGGCCATACCATCTTGGATTGGTACGGAAATGCCATTCCTAAAGTTACTCTCCTTGCATAGGAATTCGTTTGAAGAAAATATCCCAACAACGTTATGCCAACTCAAGTCTTTACTGATATTGGACCTTTCCCAGAATCAATTGACAGGAGGGATTCCAGGATGTGTCTTCCCTGCAATGGCTACCGATGAAAGTATAAATGAATACTCCTATAGGGAGTTTCTAACAATTAAGGGATGGCTTCCGATTTATCTGTCTTTTAAAGGAATGAGTCGTCAAATTTTCAGAGTGAGTGACTTGGTATCCAATGGTCGAATTCTGAAAATGATTGACTTGTCGTCAAATTTTTTAACACAAGGCATTCCTGTTCAAATTGCAGACCTCGTTCAATTGATTTCATTAAATTTGTCGAGAAACCAGTTGGTGGGTTCCATTCCTTCCGATATTGGTGAAATAGAAAACTTGGAGTTCCTGGATTTGTCGAGGAATCAGTTATCATGCGCCATTCCCACCAGCATGGCCAATATAGATCGGCTCAGTGTGTTGGACTTATCATACAACAGTTTGTCTGGGGAAATTCCAACCGGCACTCAGTTGCAAACATTTGAAAGTTCCTCCTACGAAGGTAATCCACACCTTTGTGGTCCTCCACTNACAGAATCATGCCCCGGAAACAGTTCATTTGAGGATACACATTGCCGTGACAGTGAAGGGAACAGAGAAGACGAAGATGATGGCAACCATGAAGAGAAGGATGGAGTGGGTCTGGGGATATCTCCATTCTACATAAGCATGGGTGCAGGCTTTTTCACAGGGTTCTGGGTGTTTTGGGGCTCCTTAATACTCATTGCACCTTGGAGGTATGCTTATTTCCGTTTCTTAGGCAGCATGAATGACTGGATCTATGTCACCATAGCTGTTGCACTTAACAAATTGCGGAGGAAGCTTCAGAGTCAACAACAGCCTTCCCAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00070	159365	162115	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000070s00008058.1	PF08263.7	LRRNT_2	36	73	4.40E-12
Glyur000070s00008058.1	PF13855.1	LRR_8	207	268	5.80E-10
Glyur000070s00008058.1	PF00560.28	LRR_1	282	300	1.2
Glyur000070s00008058.1	PF13855.1	LRR_8	314	374	2.00E-06
Glyur000070s00008058.1	PF00560.28	LRR_1	508	525	0.04
Glyur000070s00008058.1	PF00560.28	LRR_1	722	741	0.3
Glyur000070s00008058.1	PF00560.28	LRR_1	746	764	0.082
Glyur000070s00008058.1	PF00560.28	LRR_1	771	787	1.1

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.238
SRR1783600	control	0.240
SRR1783602	moderate drought stress	0.028
SRR1811619	moderate drought stress	0.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.629
DRR006520	Root Summer glycyrrhizin high producing strain	0.663
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.352
DRR006524	Root Summer glycyrrhizin low producing strain	0.389
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.956
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.030

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.731
SRR2868004	Drought Stress (root)	0.604
SRR2967015	Control (root)	0.368

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.558
SRR9715740	Leaf	6.723
SRR9715741	Leaf	3.760
SRR9715739	Root	0.144
SRR9715742	Root	0.457
SRR9715743	Root	0.398

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.308
SRR8749028	MeJA induced 9h	0.247
SRR8749029	MeJA induced 9h	0.154
SRR8749030	Uninduced	0.023
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.216
SRR8400027	Control - Root	0.246