Gene detail

Gene detail information of Glyur000070s00008055.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10780.1	2.00E-153	F-box/RNI-like superfamily protein
NR	XP_003525015.1	0	PREDICTED: F-box protein At1g10780-like [Glycine max]
Swissprot	tr\|Q9SAC4\|FB2_ARATH	0	F-box protein At1g10780
trEMBL	tr\|I1K4B3\|I1K4B3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G30340.1}

Sequence

Transcript Sequence

>Glyur000070s00008055.1
ATGGTGCTAAACAATTGTGTATTTGATTTCTTGTCCTCAGCTCAGCTAATGGAGTCTCTCCCTGATGCAATCCTCCAATACATCTTGTCCCACATCAACAACGCCCGCGATGTTGCGGCCTGCAACTGCGTTTCCAAGAGGTGGAGGGACTCCACGCCGTACATCAGAAGCCTCTACTTCCCCCGCAGCTCATTTGACAGCCCTTCTTCCGGTGTGGAAGGTCCTGACAACATTGTGAAGAGAATGGTATCAAGGGTTGTGAGGTTGGAGGAGCTAATCGTGTATAGCCCTTTCTCCCCTTCNGGTCTCTCATCATGGCTCTCACTTGTGGGTCTCTCCCTTCGCCAGCTCGAGCTCCGAATGGACAACCTTGCTGATAACAACAACAATCATAATCGGGCATTCGATGAAAGCCCTTCAAAATTGGAGTGTGTTGGTGTGGCCAGGAATTTGGAATCTTTGAAGTTGTGGGGTGTGTTGATGGTACATTCCCCCAAATGGGATGTGTTTCCAAATCTCAAGAACCTTGAGATAATTGGTGCGAGATTGGAGGACCCCGTTTTGGCCTTGGTGCTCCAGTCGTGTCCCTCTCTCTCCAGGTTGTTGCTGCTTGGATGTGAAGGGGTTAGGTCAGTCTCAATTGAGTTGCCATATTTGGAGCAGTGTAAGCTAGATTTTTATGGCCTGGGGAATTGTTCACTCACTCTAACCTCCCCCAAAATTGAATCCCTTGAGGTACAAGGCTGTAGCTGGATTAGGGTCCCTGAAACCAAAAACTTGAGGAAACTTGCCATATCCAATAGTGCAGGGAGAGTATACATGGTTGATTTTGGGAACCTTTCAGCTCTGGAGTTCCTTTCTATGAGGGGGATCCAGTGGTGCTGGGGTGCAATATGTAAGATGCTGAAATTGGCTAGTGAGGTGAAACATCTCTATATGAAGGTTGAATTCACTGGGGACTTTGAGGCTCTTCAACCCTTTCCAGAGATTGATTTTGTTGATTTTTTCAACAGCCATCAGAAGCTGCGAAGGTTTGATATTCATGGAGCCATGTTTGCAGCACTATGCCAGAAGAACAGTCTGAAACATGTGGATTCAGGATTTGTGATCCCATTTTTGGAGGAGGTTGTGATCACAGTGAGGTCACCGCTAAATGCTGAACAGAAAATGAGTACTCTTGAATCCTTGTTGAAGTATGGGAAAAGTCTTAGGACAATGGTTATAAAGATTCTTGAGATGAAGAGCTGCCATAACAGTGCGGATGATTTTTTTGATGAGATTTGCCGGTTCAGATACATGAACCACAACATAGTTCGAATAGAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00070	150877	152411	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000070s00008055.1	PF12937.2	F-box-like	18	52	3.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.786
SRR1783600	control	1.613
SRR1783602	moderate drought stress	0.635
SRR1811619	moderate drought stress	0.496

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.117
DRR006520	Root Summer glycyrrhizin high producing strain	2.079
DRR006521	Root Winter glycyrrhizin high producing strain	0.083
DRR006522	Root Winter glycyrrhizin high producing strain	0.081
DRR006523	Root Summer glycyrrhizin low producing strain	0.246
DRR006524	Root Summer glycyrrhizin low producing strain	0.166
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.121
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.174

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.339
SRR2868004	Drought Stress (root)	3.235
SRR2967015	Control (root)	3.136

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.904
SRR9715740	Leaf	1.927
SRR9715741	Leaf	1.029
SRR9715739	Root	2.507
SRR9715742	Root	1.024
SRR9715743	Root	2.023

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.628
SRR8749028	MeJA induced 9h	2.003
SRR8749029	MeJA induced 9h	2.060
SRR8749030	Uninduced	0.330
SRR8749031	Uninduced	0.116
SRR8749032	Uninduced	0.248

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.392
SRR8400027	Control - Root	3.822