Gene detail information of Glyur000070s00008048 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71170.1 | 3.00E-71 | 6-phosphogluconate dehydrogenase family protein |
| NR | XP_004504182.1 | 2.36E-170 | PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial-like [Cicer arietinum] |
| COG | YP_007205489.1 | 6.00E-72 | beta-hydroxyacid dehydrogenase [Singulisphaera acidiphila DSM 18658] |
| Swissprot | tr|Q949M8|3HID3_ARATH | 7.00E-88 | Probable 3-hydroxyisobutyrate dehydrogenase-like 3, mitochondrial |
| trEMBL | tr|G7L8W3|G7L8W3_MEDTR | 3.00E-169 | 6-phosphogluconate dehydrogenase-like protein {ECO:0000313|EMBL:AET04453.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00070 | 124749 | 126941 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000070s00008048.1 | PF03446.10 | NAD_binding_2 | 14 | 173 | 1.20E-40 |
| Glyur000070s00008048.1 | PF14833.1 | NAD_binding_11 | 176 | 283 | 5.40E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.944 |
| SRR1783600 | control | 18.416 |
| SRR1783602 | moderate drought stress | 7.441 |
| SRR1811619 | moderate drought stress | 7.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.029 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.826 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.511 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.970 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 57.427 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 59.288 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.012 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 64.544 |
| SRR2868004 | Drought Stress (root) | 64.908 |
| SRR2967015 | Control (root) | 62.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.649 |
| SRR9715740 | Leaf | 20.194 |
| SRR9715741 | Leaf | 39.597 |
| SRR9715739 | Root | 23.865 |
| SRR9715742 | Root | 47.078 |
| SRR9715743 | Root | 39.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.902 |
| SRR8749028 | MeJA induced 9h | 11.582 |
| SRR8749029 | MeJA induced 9h | 15.165 |
| SRR8749030 | Uninduced | 2.559 |
| SRR8749031 | Uninduced | 1.187 |
| SRR8749032 | Uninduced | 4.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.612 |
| SRR8400027 | Control - Root | 18.722 |