Gene detail

Gene detail information of Glyur000070s00008046

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03120.1	2.00E-13	ADP-ribosylation factor B1C
NR	XP_010911780.1	1.63E-15	PREDICTED: ADP-ribosylation factor 1-like 2 [Elaeis guineensis]
Swissprot	tr\|O48920\|ARF_VIGUN	1.00E-12	ADP-ribosylation factor
trEMBL	tr\|K4BJA9\|K4BJA9_SOLLC	2.00E-14	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g096910.2.1}

Sequence

Transcript Sequence

>Glyur000070s00008046.1
GACGCTGGCAAACAAAAATTCGTTATTGGCAACTACTATCACTGGGAGATGACCGAAGACAGAGATATCAAGGTGCAAATAAATGAGTACCATAGGCTGCTGGAGGATCTCAAGGCTGAAAACATCGACTTGCCAGATGCATTCATCGCTGGACTGCTCATTGAAAAGCTGCCTGAATCTTGGAAGGACTACAAACAGCAGTTGAAGCACAAACAAAAACAGCTCTCGTTGACGGACTTGATCAAGCATATCATAATTGAAGATACCAACCGTAAGGAGTGCAAGGCTGCAAGGGCAAAGGCATTGTCATCTCGAGCAAANNNNNNNNNNNNNNNNNNNNNNNNNTCGGAGATCTTCACGTTCTCGTCCGCCGTTCTCTCTGTCCGTACGTCTCAACCTCTGTCCGCCGTTCTCTCCGTCTGTAGTTCTCATCAGAGATCTTCCTCAAGTTCCCTGTATTTGAAGTTCACTGCCTTCCTCAAAGCGCTCAACATTTCATATTGTTTTAACAACGAGTCATTAGCAGAGGGGGGAAAAAGAATCTGAAGTCTGAACCTTGTGGTTGTGCATAGCGTACAATGCCTTGTGAGGGAGCTTTGGGGATGAAGAGTAGCAAAAGTATGAACTCAGGTTTTATTTCCTAGATCTTTGACACGAGACTCACGACTTATTTTAGCAAAAGTATGAGGAAGCCTTTTTATTTCATTATGCTTAGACCTTTGCAATCGAACAACCATTTATTTCAGCTCCTTTTTTTAAGGAAAATAGAGTTGGACATGAGTCCATATTTTACTGTCTTTTTATTTCCAAAATTTCTTTGAGAAACCCTCCAGTTTGACAGTTATGGGCATGAACTTTAATATTCTTCTTTTCATTTTTATGATTGAACACACTGCATGTCGAGATGTATTCACAAGAGCTCACAATATTGGAGGCAAGCCTCAAGATGATAAGATATATCAAAACTACTCCATCAAAGATGATGAAATGCCTCCTATTCCTATTGAAGCCATTATCACACCACTGGAGGAAGAGCTCAAGCTGGCTCGAATGGAGGTATATTTTGGTTTCAATGTGGAGAAATTTCAGTATAAGAATATTATTTTTACAGTTGGAGATGTTGGAGGACAAGGGAAATTAAGACCACTTTGCAGGCAATATTTTAACAACACAGATGGTCTGAGCTTGAGGGTCAGAATATCTACTGGTACACACAGCAATTTTGGATTAAAATGGAGTGAAATGCTTTTCAAGTTACATAAGGGAGTTGAAGAAAACATGAATTCTGAGGAGACCTCCTCAAAGTCATCAATAAACATGGTTTCTATTCCTGAACCCATAATTTCATTCATTCTGCTCTCTNTGCTGCTAGAAAAGTAATCCAAATCAAAGTTGATATTGTTTGAGAGAGAGTACNTTAAAGTTGGCATAATAAGTCAATCATTCATTTAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00070	116840	119064	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000070s00008046.1	PF00025.16	Arf	73	113	1.90E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.054
SRR1783600	control	3.105
SRR1783602	moderate drought stress	0.188
SRR1811619	moderate drought stress	0.206

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.200
DRR006520	Root Summer glycyrrhizin high producing strain	8.662
DRR006521	Root Winter glycyrrhizin high producing strain	16.052
DRR006522	Root Winter glycyrrhizin high producing strain	15.705
DRR006523	Root Summer glycyrrhizin low producing strain	5.371
DRR006524	Root Summer glycyrrhizin low producing strain	5.852
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.596
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.561

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.035
SRR2868004	Drought Stress (root)	3.908
SRR2967015	Control (root)	1.760

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.401
SRR9715740	Leaf	0.000
SRR9715741	Leaf	6.410
SRR9715739	Root	0.000
SRR9715742	Root	1.362
SRR9715743	Root	1.328

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.536
SRR8749028	MeJA induced 9h	0.490
SRR8749029	MeJA induced 9h	0.632
SRR8749030	Uninduced	1.235
SRR8749031	Uninduced	0.847
SRR8749032	Uninduced	0.704

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.649
SRR8400027	Control - Root	3.189