Gene detail

Gene detail information of Glyur000070s00008043

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G61000.1	9.00E-93
NR	XP_004504164.1	0	PREDICTED: kinetochore protein nuf2-like [Cicer arietinum]
trEMBL	tr\|G7L8V7\|G7L8V7_MEDTR	0	Kinetochore Nuf2-like protein {ECO:0000313\|EMBL:AET04447.1}

Sequence

Transcript Sequence

>Glyur000070s00008043.1
CATTGAACTATCATTTTAAAATAGATGGAGTATGAAAAATTAAAAATTTATTCCAATTGCGGCTGCCGGAAAGTACTTGGCGGGAAAACTGCTCGTTAAATTTAATCAAAATTAAAATTAAAAACTTAATTGCACACTGTGGTCTCGTTTTTGAGTTGCGGTTGTGCGCTGGTTGGGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGCGGTGTCGAACTACGAGTATCCAAGGCTGGGGCGGCCAGAAATAGTAGCAATCCTAGCGCAGTTCCAAATCGCCAACGTCACCGAGCAGGACCTCACCAATCCCAAACCCGGCGTCGTTTCCGANCTCTACACCCGCATCCTCAACCACCTCGACATTCTCCTCGAGGAAGACAACGAACAGCTTGAGTTCGATGCCCTAGAGCAGCTCGAGAACCCCGATCATCACGTTGGATCAGTCCGCGCCATCAGGCTCTACACCAAGATAAAGGAAATGCTCAACGCCCTCGAATGCCCCAAGAAATTCACCTTTTCACTCGCCGATCTTCTCAAACCCGATCCTCGCAGAACCGAGTTCTTCCTCGGCGCTCTCCTCAATTTCTGTCTCGACAGGGAGGGGAGAATGAATTCCATATCTGAAATCGTAGAGGAATTCAATGCTTTGGAGGAGCAGCGAGCGGAGTTGGAGGAGAATAAGATTTTGCAGTTGAAATCGGCGATTGCTGAGTGCAATGAAGCGAGGGAGAGGGAGATGCCTTTAGTTCAGGAGGTGGATGCAAAAGTTAAAGAGCTGCGTCAAACTATTGCGGGCCTCAATAATAAACAGATGTCACTGAGGACTACTTTGAAGAAGTCGAAGGAGAAGACCGCAGAAATGGATACGGAGGTGNGCTTATTGTCTGATATGATTGAACATAACATAATCTCATGGAGGCTTAGCAGAATGAGTTATAGAATCTTAACCCTTTACATTTCTAATGCCGAATTTACACTGGTACAAAATGTTCAAGAGAATGCAAATCTACGCTCAAAAATTGCTCAATCGCCTGATAAAGTGCAGAGGGCTTTAGAGGAAAAGAAATTAGCTCGAGAGGAAGCAAGGAATGCTGAAAGATTAGCCATGCATACTTTCCATGAGAAGACTGCCCTTNTTGAAGTTTATTCCAAGGTTTACAAAAAAATGTCAAAGCACTACAAGCAGATGCAGGCTATACAAGAACAGGTCAATTCTGCTAAATCTATTGAAAAGGATCTTAAAGCATTAAAAGCTAAACTTAGTGATGAGGAANTATTGGAGAAGTCACTCGAGGCCAAATTGGCTGAAAGACAAAGTAAAGGTGAGCANATGGAAGAGTTGAGGAAGCAGTTGGAGAAAGAGTGCAGCATCATGTGGGAGGAAGCAACTAAACACCTAAGCAGTAAAAAATCAGAGGTGGAATCTAAGAGATATGCCATAGAAACAAGACAGAGAAATGTCGAGGCTGTGTTATCTAAGGTGGATGCCATAAATAATCAAATNACCTCAGTAAAAGAATCTGCAACAGTTAAANTGGAACAGTTAGGCCGCAAATGCNGAGAGATAATTGAAGAGTTTCACAAGTATGCCAATTCAATTGCACGTGTGGTTGAATCTGGGCCAAAGAATAAGACCATTGAAGGAGCTGGATTTGTCAATTTAGATCCCGTTTAATTATGGACTAGANTTGCCCTGCAAAGTTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00070	92430	97018	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007067 mitotic nuclear division

cellular_component
GO:0000775 chromosome, centromeric region

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000070s00008043.1	PF03800.9	Nuf2	4	149	1.10E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.016
SRR1783600	control	5.093
SRR1783602	moderate drought stress	2.851
SRR1811619	moderate drought stress	2.854

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.646
DRR006520	Root Summer glycyrrhizin high producing strain	6.174
DRR006521	Root Winter glycyrrhizin high producing strain	8.400
DRR006522	Root Winter glycyrrhizin high producing strain	8.001
DRR006523	Root Summer glycyrrhizin low producing strain	3.585
DRR006524	Root Summer glycyrrhizin low producing strain	3.610
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.100
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.041

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.810
SRR2868004	Drought Stress (root)	8.939
SRR2967015	Control (root)	9.771

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.917
SRR9715740	Leaf	0.166
SRR9715741	Leaf	0.335
SRR9715739	Root	0.262
SRR9715742	Root	0.806
SRR9715743	Root	0.707

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.511
SRR8749028	MeJA induced 9h	7.572
SRR8749029	MeJA induced 9h	8.909
SRR8749030	Uninduced	3.691
SRR8749031	Uninduced	2.286
SRR8749032	Uninduced	2.376

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.601
SRR8400027	Control - Root	12.613