Gene detail information of Glyur000070s00008037 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G60950.1 | 3.00E-20 | 2Fe-2S ferredoxin-like superfamily protein |
| NR | XP_002269617.1 | 3.13E-45 | PREDICTED: ferredoxin-like [Vitis vinifera] |
| COG | YP_007162570.1 | 2.00E-21 | ferredoxin 2Fe-2S [Cyanobacterium aponinum PCC 10605] |
| Swissprot | tr|Q43517|FER1_SOLLC | 1.00E-43 | Ferredoxin-1, chloroplastic (Precursor) |
| trEMBL | tr|F6HK77|F6HK77_VITVI | 1.00E-45 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55080.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00070 | 59007 | 59345 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000070s00008037.1 | PF00111.22 | Fer2 | 59 | 110 | 3.70E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.013 |
| SRR1783600 | control | 0.108 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.029 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.326 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.705 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.424 |
| SRR2868004 | Drought Stress (root) | 0.372 |
| SRR2967015 | Control (root) | 0.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.354 |
| SRR9715740 | Leaf | 6.288 |
| SRR9715741 | Leaf | 1.772 |
| SRR9715739 | Root | 0.107 |
| SRR9715742 | Root | 0.164 |
| SRR9715743 | Root | 0.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.196 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.211 |
| SRR8749030 | Uninduced | 0.322 |
| SRR8749031 | Uninduced | 0.164 |
| SRR8749032 | Uninduced | 1.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.725 |
| SRR8400027 | Control - Root | 1.020 |