Gene detail

Gene detail information of Glyur000070s00008026.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G31810.1	0	ACT domain-containing small subunit of acetolactate synthase protein
NR	XP_004490063.1	0	PREDICTED: acetolactate synthase small subunit 2, chloroplastic-like isoform X2 [Cicer arietinum]
COG	YP_007173361.1	4.00E-58	acetolactate synthase small subunit [Dactylococcopsis salina PCC 8305]
Swissprot	tr\|Q93YZ7\|ILVH2_ARATH	0	Acetolactate synthase small subunit 2, chloroplastic (Precursor)
trEMBL	tr\|K7KQP0\|K7KQP0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G30130.2}

Sequence

Transcript Sequence

>Glyur000070s00008026.2
CTGCCCCAGCGATCACGAGCATCGATGTTGGCCTTGCGGCTGAGCAAGAGCGTGGCGACGTCGACGTGGCCCTCGCAGGCGGCGATGTGGAGGGCGGTGCGGCCGTCGAGGTCAATGCTGTTGACGTCGATGCCTTCGTTGAGCAGGTCCTCCACTCCCTTAACGTCCCCTCGGCATGCCATGAAGAGCAGCTGCATGGTGGAGTCGAGGTTCTCCGGNACGGTGAGCTCGGGCTGGTCCTGTGCGGGGCTCCTCCGGATCGGGTCGAGCGACGACTGCCTCCCAAAGTTGAACCGGAGGTTGTTCCGCCGCGGATCCAGCGACGCCTGCCGCGTGAACTGCCGGCTCAGGCTCTTCCGCCGCGACCCCGACGAGAATTGCCGCGATATGCCGCGCTTCAGTTGCGCGGCAATGTTTTCCATGGTTTTTTGGATTATTTGGATGGATTATCCAAACCAACCCAAATTTTACTTCCAAACCAATTCTTAAGGGAGGGGGCTCTCTACGTGTTGGTATTAGAACAACACGGTTATTGTACTTGTTACTTATTATTCAGAGGGAAAAAAATTAATAAAAACAAAAAAAATAAAATTATTCTCTCTTTTTATTTCCCTGAGTAATAAGGGGGAGAAAGGAGAATCTACCGATTTAGAAGGGAAAGGGAAGCGAAGGATTGGGAATAATAATAATAATAGGATTTTTTTAATTTTTTGTCTCAAAGTTGAAAAGGAGTGAGGTAGAGGAAACAAATAGTTAGGCGCAGCCACACTGAGCCACTTCCACGGTGCCGCCATCCATCCATCACTGGTTTCAGTTTCAATCTGCTCGCTCTCTCTTCTCCACTCGCCATGGCGACCACTCTNACTCCAATCCAAACCTTGAAACTCCATTCCCATTCTCCTCAACCGAAACCAAACACTCTCTTCACAACAAACCCACCTCCTTCTTCCATCTCAATAATATCCCGCCCTCACACTTTCATCACCTCCCGCCCCAACAAACTCCTCCTCTCCGCCGCAACTTCCGGAGACCTAACCGTCTCATCCAACGTCCCTCCCCCTTCCCCCTCTCGCTCAAAGGTTCGGCGACACACGATTTCGGTGTTCGTTGGAGATGAGAGTGGAATGATTAACCGTATTGCGGGGGTGTTTGCGAGAAGAGGATATAACATTGAGTCACTCGCCGTTGGTCTCAATGAGGATAGGGCTCTCTTCACCGTTGTTGTGTCTGGAACCGATAGGGTGCTGCGCCAAGTTGTCGAGCAGCTCCAGAAGCTTGTCAACGTTTTAAAGGTAGAAGATCTTTCCAATGAACCCCAGGTAGAACGTGAACTGATGCTCATAAAAGTGCATGCAGATCCCCAAAACCGTGCCGAGATAAAGTGGTTGGTGGACATCTTCAGAGCCAAGATTGTGGATATCTCGGAACATTCGGTGACGATTGAGGTCACAGGAGATCCAGGGAAGATGGTTGCAGTTCAAAGAAATTTAAGCAAGTTTGGAATTAAAGAAATAGCCAGAACTGGAAAGATTGCATTAAGAAGGGAAAAGATGGGTGCATCTGCTCCATTTTGGCGGTATTCAGCTGCTTCTTATCCAGATCTTGAAGGAAAAACAGCTATTAATGCCCTTGTTGGAGCGAAAAATAGGAATCCTGTTGACAAAACTGTTACACCTGTCGGGGGAGATGTTTATCCTATAGAGCCTTCAGACAGTTTTACAGTCAATCAAGTACTTGATGCTCACTGGGGTGTTCTCAATGATGAAGATATTAGTGGAATTCGATCACACACTTTATCCATGCTTGTGAATGATTCTCCCGGAGTTCTAAACATTGTTACAGGGGTCTTTGCTAGAAGGGGCTATAACATTCAGAGTTTAGCTGTAGGACATTCAGAAGTTGAAGGAATTTCTCGACTTACAACCGTGGTTCCTGGAACAGATGAGTCAATCAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTGCATGAGGTCCGTGATATAACCCACTTGCCGTTTGCTGAGCGAGAATTGATGCTAATAAAGATTGCTGTAAATGCTGCTGCACGACGCGATGTCCTTGATATTGCCAGCATTTTCAGAGCTAGCGCTGTTGATGTGTCCGATCATACAATAACCCTCGAGCTTACTGGAGATCTGGACAAGATGGTTGCACTGCAGAGATTGTTAGAACCATATGGCATTTGTGAGGTGGCACGAACTGGACGGATAGCACTAGTCCGTGAGTCAGGTGTGGACTCCAAGTACTTGCGTGGATACTCTTTTCCTTTATAAGTTTTCGGTTTGTAGTTGTAGGGCTTTTACTTNTGCTGTCCTTCTTACTGGTTTTGCCTTCTAAACCTTAATGTTGAGTCTCGGTGATTTGCAAATCTAGGCTTCAAATGACATCTGAGATTAAAGAAAAAACGAAACGATTTCCTTTCCCTCGCCTTTGTTTTTCGTAAATTGTATTTTAGTTTTGGCAAAACTACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00070	14073	20525	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01653	E2.2.1.6S, ilvH, ilvN	EC:2.2.1.6	2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Butanoate metabolism	map00650
			C5-Branched dibasic acid metabolism	map00660
			Valine, leucine and isoleucine biosynthesis	map00290
			Pantothenate and CoA biosynthesis	map00770

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009082 branched-chain amino acid biosynthetic process

molecular_function

GO:0003984 acetolactate synthase activity

GO:0016597 amino acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000070s00008026.2	PF13710.1	ACT_5	90	149	2.00E-13
Glyur000070s00008026.2	PF10369.4	ALS_ss_C	159	233	3.50E-30
Glyur000070s00008026.2	PF13710.1	ACT_5	322	384	2.00E-13
Glyur000070s00008026.2	PF10369.4	ALS_ss_C	394	468	2.30E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.882
SRR1783600	control	25.624
SRR1783602	moderate drought stress	29.895
SRR1811619	moderate drought stress	30.053

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.062
DRR006520	Root Summer glycyrrhizin high producing strain	23.638
DRR006521	Root Winter glycyrrhizin high producing strain	18.278
DRR006522	Root Winter glycyrrhizin high producing strain	17.764
DRR006523	Root Summer glycyrrhizin low producing strain	28.281
DRR006524	Root Summer glycyrrhizin low producing strain	28.246
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.674
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.728

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.707
SRR2868004	Drought Stress (root)	26.240
SRR2967015	Control (root)	27.020

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.242
SRR9715740	Leaf	28.929
SRR9715741	Leaf	31.672
SRR9715739	Root	21.460
SRR9715742	Root	38.876
SRR9715743	Root	37.080

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	73.966
SRR8749028	MeJA induced 9h	45.576
SRR8749029	MeJA induced 9h	44.842
SRR8749030	Uninduced	25.801
SRR8749031	Uninduced	12.964
SRR8749032	Uninduced	18.339

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.006
SRR8400027	Control - Root	38.051