Gene detail

Gene detail information of Glyur000069s00004095

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54990.1	5.00E-125	alpha/beta-Hydrolases superfamily protein
NR	XP_003521705.1	0	PREDICTED: protein AUXIN RESPONSE 4-like isoform X1 [Glycine max]
Swissprot	tr\|Q9FZ33\|AXR4_ARATH	3.00E-163	Protein AUXIN RESPONSE 4
trEMBL	tr\|I1JRC3\|I1JRC3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G39740.1}

Sequence

Transcript Sequence

>Glyur000069s00004095.1
ACAGTCTACACTTGACCCTGCAAAGTGCAACCCCATTACNCACGCCCATGATGCTGTCCCCTGATGAGATCAGATGAGATCCAACTTTAACAAAGCTTGAAACTTGAACTGCGTTGTGCGTGGGCTTGCTTGCCAAANTCGGAGCCTGAAGGTGAGTGATCGATCATGGCGATCATAACAGAAGAAGAACCAGACCAACAACAACAACAACCACCACCACCTAAACAACATAAACACTCACAGATCCCACCACCACCCAAACCCCGCCACCCCAAACCATCCCCAAGCACAAGACATCATCAGCAACAAACCAACCACTTCTCTTTCTGGTTCTACTTCACTCTCTCCGTCTCTCTCATCACCCTCTTCTTCGTCTTCTTCTCCTCTTCCCTCTCCCCACAAGACACCAAAACCTGGTTCCTCACCTTGCCCACCACCCTCCGCCAACACTACTCCAAAGGCCGCACCATCAAGGTGCAGACCCGCCCCAACCACCCACCCCTCCAAGTCTTCACCATCGAAGAGGGCCCCACCACTTCAACGGCTTCCGAGAACGTTGTCATTCTACACGGCCAGGCCCTCAGTTCATACTCCTATCGTCACGTCATCCAATCGCTGAGCGCCAAAGGAGTTGGCGCTGTTGCAATCGACCTACCCGGAAACGGTTTCTCCGACAAGTCCATGGAGGATGATACGGTCGAGGGGTCAAGTGGGGTTTTTGGGAGGTTTATGCATGTGTACAGTGAGATTCAGGAAAAGGGTTTTTTTTGGGCGTTTGATCAAATAGTGGAAACGGGTCAGATTCCGTATGAAGAGATTCAAGCGAGGATGTCGAAGAGGAAGGTAAAAAAGCCTGTTGATTTGGGTCCACAAGAGATGGGAACAGTGTTGGGACAAGTCATTGATGCAATGGGGCTTTCCCCTGTTCACTTGGTGTTGCACGANTCCGCTCTGGGTTTGGCTGCGAATTGGGTCTCTGAGAATCCTTCATTGGTGAGAAGCGTGACGCTTGTTGACACCGCAGCTTCAACTGTGGGTGCTTTCCCTGTTTGGGTTCTGGAGATCCCTGTGATTAGGGAGGTGGTTTTGGGGGTTCCATTGGTTTTTGCNAAGGTGGTGAATTTGTGCTGTTCTAAGAGGATTGGTGTTGTGGATGTGGATGCACAGAGGGTGCTCTTGAAGGGCAGGGATGGAAGGAGAGCGGTTGTGGCTATNGGGAAGAATTTGAATTCTAGCTTTGATTTAGCAGAGTGGGGTGATTCTGATGGATTGAAGGATATGCCAATGCAACTGCTCTGGTCTGGTGAGTGGTCTCAAGAGTGGAGCCGTGAGGGGGATTGGGTTGCTCGTGTGCTTCCGCGGGCGAGTTTTGTCACACATTCTGGTGGCCGGTGGGCTCAGGAGGATGTGNCAGTTGAGATAGCTGAAAAAATTTCTCAGTTTGTCTTGTCGCTGCCAAAGACTGTCAGAAAAGTCGAGCAAGAGCCCATCCCAGACCACATACAGAAGATGCTTGATGAAGCAAAAGCCAATGGTCATGATCATCTTCACCATGATGGTCATGGTCATGGTCACGGACACGATCACCATGGTGAAGCTCACATCCATGGAGCTAATTATATGGACGCATATGGGCTCGGTCAAGGACCTCATGGTTGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	410058	413252	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004095.1	PF12697.2	Abhydrolase_6	131	420	2.60E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	45.289
SRR1783600	control	45.491
SRR1783602	moderate drought stress	44.592
SRR1811619	moderate drought stress	45.189

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.539
DRR006520	Root Summer glycyrrhizin high producing strain	35.960
DRR006521	Root Winter glycyrrhizin high producing strain	12.172
DRR006522	Root Winter glycyrrhizin high producing strain	12.332
DRR006523	Root Summer glycyrrhizin low producing strain	35.478
DRR006524	Root Summer glycyrrhizin low producing strain	35.474
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.866
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.077

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.122
SRR2868004	Drought Stress (root)	34.804
SRR2967015	Control (root)	37.383

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.302
SRR9715740	Leaf	18.823
SRR9715741	Leaf	10.326
SRR9715739	Root	53.506
SRR9715742	Root	35.435
SRR9715743	Root	37.001

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.237
SRR8749028	MeJA induced 9h	12.211
SRR8749029	MeJA induced 9h	10.031
SRR8749030	Uninduced	0.405
SRR8749031	Uninduced	0.051
SRR8749032	Uninduced	0.646

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.599
SRR8400027	Control - Root	43.523