Gene detail

Gene detail information of Glyur000069s00004090

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27550.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004494619.1	0	PREDICTED: kinesin-like protein KIFC3-like [Cicer arietinum]
Swissprot	tr\|O81635\|ATK4_ARATH	4.00E-85	Kinesin-4
trEMBL	tr\|K7N584\|K7N584_SOYBN	0	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur000069s00004090.1
ATGCTCACTGAAAAGTTTAACCGGTTCGTCATTGACTGCAATTTGAAGCCGACATCAGATAATGCATCAGTGCAATTGAATGAGACCTCTGACAACACGGATGAGAATACTATGTCCAGTGGAATCCATGAAATTTCTCCTGATCAGGGTCATACACTCCCAATATTGAAGAAAATCCTTGACTTGAGTACCGAAGTTCAGAATTTGAAGAAGCAACATGTAGCCCTATATGATCAAGTGAAACTCACAACCGAGTCCTTTCCGGGCCAAGATGTTTTAAAATCTGTTCAGCTTCTGGGTGCTGAATATGAACTCTTGAAAAGAAAGTACATGGAAGAGTCCTTTGAGCGTAGGCGGCTTTACAATGAAGTGATTGAACTCAAGGGAAATATCAGAGTTTTCTGCAGATGCAGACCATTAAATGAAAGTGAAACTGCAAATGGATCGGCAATATCTGTTATCAATTTTGANTCATCTCCTGAGGAGCTTCAAGTCATTTGCTCCGATTCTTCTAAAAAGCAATTTAAATTTGATCATGTATTCAGACCTGAAGATAACCAAGAGGCTGTTTTTGCACAAACAAAACCTATTGTTACGTCAGTATTAGATGGATATAATGTTTGCATTTTTGCATATGGCCAAACTGGAACGGGCAAGACTTTTACCATGGAGGGAACACCAGAGCATAGGGGAGTTAACTATAGAACCCTGGANGAATTATTTCGAATATCTGAAGAGAGACAAGGAATAATAAAATATGAATTGCTTGTTAGCATGATGGAGGTTTACAATGAGAAGATAAGAGATCTCTTGGCAGAAAATTCTTCTGAACCTACTAAGAATTTGTTGCGAGTAACTGTTGTGGGGGAGAATTTAATCAATGGCCAGCGAACAAGGAGTCACCTTTGGCTAGTAGACTTAGCTGGCAGTGAGCGTGTAGGGAAAACTGAAGCTGAAGGCGAAAGGCTGAAGGAATCTCAATTCATAAATAAGTCTCTATCAGCACTTGGTGATGTTATTTCAGCCCTTGCGTCCAAATCAGCCCACATACCTTATAGGAACTCAAAGCTCACTCATATACTCCAGAGCTCTTTAGGAGGAGATTGCAAAACTTTAATGTTTGTCCAGATAAGTCCAAGTACAGCAGACTTAACAGAGACACTTTGTTCACTGAATTTCGCCACACGTGTTCGAGGAATTGAGAGTGGCCCAGCCCGCAAGCAAGCAGACCTCACTGAGCTCCTTAAGTACAAGCAGATGGCAGAAAAGCTCAAACACGACGAGAAGGAAACTAAGAAATTACAAGATAACCTGCAGACCACACAAATGAGACTAGCTACAAGAGAACTCATGTGCCGAAATCTTCAAGAAAAGGTTAGGGACCTTGAGCACCAGATAGCAGAGGAGAGAAAAATCAGACTAAAGCAAGAAAGCCGATCACTTGCCGCAACCCAACCTTCAGCAGTGTCATCATTAAAACAGGCGGCTGCCGAGAAAGCCATAAAGAAGACACCACTGATTCCGTCAGAAAGACCGCCACTGAGAAGAATTACTAATACCAATTCCTTGCCTCAACCATCCGAGAGAAGGCCCTCTTGTAGCTCTTCCATGGAAGGAAAGGAAAACATAGCCAGAATGAACTCAATGGCAAAACCAAGAAGGAGGNCATCCATTGCTGTGAGACCACCACCTGCACCATCAAAAGCACAGCTCCTTCAGCCTAGAAGGCGAGTTTCGGTGGCTACACTCCGTCCNGACACAACTTCTGACATGACAAATTCACTCCATATCTCTGCCTCTCAATCCACCATTGGAAGCAGCAGTGTTCAGCAGCAATCAATGTTTCGGAACCAAAGGAAAGCTCGATATTCAAGGTTGTTCGCTCCAATGGCAGCATCATCAGTTGAGACAACACCAACTTTGATGAGAAGCCACAGCAAGTTTGCGGGGAGTCCAACACAGGCAGATTCGNGGATGGCTAGGCATCCAATTCCACTGCAACGCAAATCTTTAATATGGAGTCCTCTCAAGCTGAGAGGCCTGAAAAGTAGCAGAAAGACATCACTTTTGCCATCTCGGCCTTCCACCCAAATGCAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	387737	391816	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004090.1	PF00225.18	Kinesin	136	281	1.60E-42
Glyur000069s00004090.1	PF00225.18	Kinesin	289	400	3.80E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.708
SRR1783600	control	3.612
SRR1783602	moderate drought stress	2.428
SRR1811619	moderate drought stress	2.496

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.216
DRR006520	Root Summer glycyrrhizin high producing strain	4.977
DRR006521	Root Winter glycyrrhizin high producing strain	0.791
DRR006522	Root Winter glycyrrhizin high producing strain	0.679
DRR006523	Root Summer glycyrrhizin low producing strain	1.404
DRR006524	Root Summer glycyrrhizin low producing strain	1.421
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.171
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.218

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.235
SRR2868004	Drought Stress (root)	6.232
SRR2967015	Control (root)	5.482

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.501
SRR9715740	Leaf	2.227
SRR9715741	Leaf	4.147
SRR9715739	Root	0.097
SRR9715742	Root	0.970
SRR9715743	Root	0.802

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.632
SRR8749028	MeJA induced 9h	10.969
SRR8749029	MeJA induced 9h	11.286
SRR8749030	Uninduced	0.925
SRR8749031	Uninduced	0.670
SRR8749032	Uninduced	2.899

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.280
SRR8400027	Control - Root	5.066