Gene detail

Gene detail information of Glyur000069s00004089

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05340.1	1.00E-167	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004494620.1	0	PREDICTED: pentatricopeptide repeat-containing protein At3g05340-like [Cicer arietinum]
Swissprot	tr\|Q9MA85\|PP215_ARATH	0	Pentatricopeptide repeat-containing protein At3g05340
trEMBL	tr\|G7KYP2\|G7KYP2_MEDTR	0	PPR containing plant-like protein {ECO:0000313\|EMBL:AES82510.1}

Sequence

Transcript Sequence

>Glyur000069s00004089.1
ATGACTACAGTGTTGTCAGCTTGTGATGGATTGGGATTCTCTAGTAGTGTAACCCGAATGATCCATGGTTTGGTGTTTGTTGGTGGTTTTGAGAGGGAAATTACAGTGGGGAATGCTCTCATAACATCATATTTTAAATGTGGGTGTTTTAGCCATGGAAGGCAGGTTTTTGATGAGATGCTTGAGAGGAATGTTGTAACTTGGACTGCAGTGATTTCTGGCCTCGCGCAAAATGAATTTTATGAGGATTGTTTGAGGTTGTTCACTCGAATGCGTTGCGGGACTGTGAGTCCTAATGCTTTGACATATTTGAGCTCGCTCATGGCCTGTTCGGGCTTGCAGGCTTTGGGAGAAGGCCGTAAGATTCATGGCCTGCTCTGGAAGTTGGGAATGCACTNGGATTTATGCATTGAAAGTGCTTTGATGGATTTGTATTCAAAGTGTGGTAGTTTAGAAGCGGCATGGCAGATTTTTGAGTCTGCTGAGGAACTTGATGAGGTTTCCTTGACTGTAATACTTGTTGCTTTTGCTCAAAATGGATTTGAGGAGGAAGCTATCCAGATATTTACAAAAATGGTGACATTGGGGATTGAAGTCGACCCCAATGTGGTTTCTGCTGTTCTTGGAGTGTTTGGTGTTGGCACTTCTTTGGCTCTTGGTAAGCAGATCCACTCTTTGATCATAAAAAAGAATTTCAGTGAGAACCCTTTTGTTGGTAATGGACTTATAAACATGTATTCCAAGTGTGGAGATTTGTATGGCTCTCTCCAAGTCTTCCATCAGATGACTCAGAAGAATTCAGTTTCATGGAACTCAATGATTGCTGCTTTTGCTCGCCATGGGAGTGGTTTCAGAGCACTTCAATTTTATGAAGAGATGAGAGCCGAGGGTGTAGCGCCGACCGATGTTACGTTTTTGTCATTACTCCATGCTTGCAGTCATGCAGGCTTAGTTGAGAAGGGCATGGAGCTTTTGGAATCTATGACTAGAGATCACGGGATAAGTCCCCGGTCCGAACATTATGCCTGTGTCGTTGACATGTTGGGTAGGGCAGGACATCTTAAAGAAGCTAAAGAATTTATTGAGGGATTGCCTGAGCATCCTGGTATACTGGTTTGGCAGGCATTGCTTGGTGCTTGTAGCATACATGGTGATTCTGAGATGGGTAAATATGCTGCTGATCAACTATTTTTAGCCACCCCGGCTAGCCCGGCTCCTTATGTTTTGATGGCAAACATATATTCTGTCGAAGGGAAATGGAAAGAGAGAGCATGTGCCATTAAGAGAATGAAAGAGTTGGGAGTAGCAAAAGAAGTGAAGTGGCACTTTGTCATCCAGACAATGCTTCCTGCCCAACAAGGTCCACAAACTGTGACGACAATAGCAGCGAGAAGAATGGGATCGTCGTGGCTGTGTAGTCTCAGCCTAACAACAACAACGATAATAACTCCTACGTTTGGAAATCGCAGTTTTCCGTTATCTGTGAAGAAGAAAACAAGGGCGTGTTGCAGTTGCAGAGGCAGAGGAGACGATGCTCCTCTGTCCACTGCTTCTGCCTATGCCGTCCTGGGAGTGCAACCCCACTCCTCCGCCTCCGAAATCAAAGCTGCTTTTCGAGCCAAAGTGAAGCAGTTCCATCCAGACCGTGTTCGAATTCCTGCATGGAAAGAGCCCCTCGTGCTTTCACCTATGTCTCTTCAACGGGAACAGCGCGTGCGTCTTCTCAAGGTCACGGGGAAGATTACCAAGTTCAATGTGCTGTTGGACAATGCCCTCGAAGTTGCATTCATTATCATACTAGATGCACACTATGATACATCAGCTGAGGCAGACTTGCTCTATTCACTTATAACTAAAGCTAAGTTTGAGAATAACCGATACCAAAAGCCAAAGAAGCAAACCAAAGTTTCAAGCCAGCATGTTGATTGGTTTTAATAACGGGTGCATGTCTTCACTCCCCAACCTATAGCACTGAGATTGATTGATGAGACATGGTTCCCAATACTACCAATCAAAGGTATTGCTAGATTAGCAGCTGCTCATAGGAGGAATAAAGTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	382497	386722	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004089.1	PF13041.1	PPR_2	64	109	5.10E-08
Glyur000069s00004089.1	PF13812.1	PPR_3	140	159	0.22
Glyur000069s00004089.1	PF01535.15	PPR	167	197	0.0083
Glyur000069s00004089.1	PF13041.1	PPR_2	265	313	8.80E-11
Glyur000069s00004089.1	PF00226.26	DnaJ	519	553	2.20E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.569
SRR1783600	control	0.602
SRR1783602	moderate drought stress	0.754
SRR1811619	moderate drought stress	0.788

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.311
DRR006520	Root Summer glycyrrhizin high producing strain	1.278
DRR006521	Root Winter glycyrrhizin high producing strain	1.029
DRR006522	Root Winter glycyrrhizin high producing strain	1.228
DRR006523	Root Summer glycyrrhizin low producing strain	1.390
DRR006524	Root Summer glycyrrhizin low producing strain	1.238
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.353
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.559

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.516
SRR2868004	Drought Stress (root)	1.746
SRR2967015	Control (root)	1.489

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.823
SRR9715740	Leaf	24.520
SRR9715741	Leaf	26.669
SRR9715739	Root	0.356
SRR9715742	Root	0.661
SRR9715743	Root	0.760

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.060
SRR8749028	MeJA induced 9h	1.313
SRR8749029	MeJA induced 9h	1.248
SRR8749030	Uninduced	0.511
SRR8749031	Uninduced	0.867
SRR8749032	Uninduced	1.218

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.474
SRR8400027	Control - Root	1.172